Browse Element(s) Details


Os.8503.1.S1_at

Description gb:AK062563.1
DB_XREF= gi:32972581
TID=Os.8503.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8503 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-E12, full insert sequence.
FL= gb:AK120112.1 gb:AK062563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3911011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39080NANA6+23203563..23205056UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g39090OsAffx.24317.5.S1_x_at11/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.24317.5.S1_at10/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.24317.3.S1_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090Os.55262.1.S1_x_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.24317.6.S1_x_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.27015.2.S1_x_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.31512.1.S1_x_at1/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090Os.49703.1.S1_at1/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39100OsAffx.28002.1.S1_at11/116+23216726..23216998hypothetical protein
LOC_Os06g39110Os.8503.1.S1_at11/116+23226138..23227392expressed protein
LOC_Os06g39120Os.37051.1.S1_at11/116+23231538..23232572expressed protein
LOC_Os06g39130NANA6+23236937..23237373hypothetical protein
LOC_Os06g39140Os.12297.1.S1_at10/116+23240330..23242269protozoan/cyanobacterial globin family protein, expressed
LOC_Os06g39150OsAffx.5954.3.S1_x_at4/116+23247166..23247996hypothetical protein
LOC_Os06g39160OsAffx.5954.1.S1_x_at3/116+23249555..23252138Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8503.1.S1_at--718--1891Chr06:23226849..23226873 (25 bp)
ACGGCGGTGGCCTAATACCCATCAG
LOC_Os06g39110
Os.8503.1.S1_at--62--10111Chr06:23226896..23226920 (25 bp)
TATGGACGCGGACGCTATCCCTGCT
LOC_Os06g39110
Os.8503.1.S1_at--517--4611Chr06:23227027..23227051 (25 bp)
GCGACCCAATGCACCCTATAAGCTA
LOC_Os06g39110
Os.8503.1.S1_at--1155--2451Chr06:23227094..23227118 (25 bp)
AACACACATGTGTCGAGGTTCGTAG
LOC_Os06g39110
Os.8503.1.S1_at--663--6871Chr06:23227171..23227195 (25 bp)
GTATCTATATATGTCGAGGGCACGT
LOC_Os06g39110
Os.8503.1.S1_at--209--6891Chr06:23227210..23227234 (25 bp)
GTATATACGTTGATCTCTCGCAGGT
LOC_Os06g39110
Os.8503.1.S1_at--817--6411Chr06:23227221..23227245 (25 bp)
GATCTCTCGCAGGTACTAGAACGTA
LOC_Os06g39110
Os.8503.1.S1_at--20--431Chr06:23227267..23227291 (25 bp)
ATCATATATACCGTTCTTCCGTCTT
LOC_Os06g39110
Os.8503.1.S1_at--1098--7131Chr06:23227287..23227311 (25 bp)
GTCTTCCATGTGCTAGTGTTCATTA
LOC_Os06g39110
Os.8503.1.S1_at--909--3991Chr06:23227338..23227362 (25 bp)
CGTGAGTGTGTGTGACTGGTTTCAA
LOC_Os06g39110
Os.8503.1.S1_at--716--331Chr06:23227367..23227391 (25 bp)
ATAAAGTGCCGCTGTGTTAATTGTC
LOC_Os06g39110
Target Sequence 
ACGGCGGTGGCCTAATACCCATCAGGCCTGATCTCCCCGCCCCCGGCTATGGACGCGGACGCTATCCCTGCTTCCGACCT
CTCCCCTACCATCCCACGCCGCCGCTGCCGCCACCGCAGAATGGGGACACCCCGCCGCCGTGATCGAGCATGGCCGGCCG
CCGCGACGACGACCTCACGCGACCCAATGCACCCTATAAGCTACCCCTCCATCCCAAAAAGAGTTCAATTGTAACTATGA
ATCTGAACACACATGTGTCGAGGTTCGTAGTTAGAAATTGGCTTTGTATGGGACGGAATAGTATACGCGTATACGTATGT
ATGTATCTATATATGTCGAGGGCACGTATGTACGTACGTACGTATATACGTTGATCTCTCGCAGGTACTAGAACGTATAC
TTGTTACTAGCTATATGGATCATATATACCGTTCTTCCGTCTTCCATGTGCTAGTGTTCATTAGCAGGAATAAAACGGAT
AGGTGGGTGCGTGAGTGTGTGTGACTGGTTTCAAACAAATAAAGTGCCGCTGTGTTAATTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis