Browse Element(s) Details


Os.8507.1.S1_at

Description gb:AB097460.1
DB_XREF= gi:26106013
GEN=OsUGE-3
TID=Os.8507.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8507 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsUGE-3 mRNA for putative UDP-glucose 4-epimerase, complete cds.
PROD=putative UDP-glucose 4-epimerase
FL= gb:AK104977.1 gb:AB097460.1 gb:AK073610.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3580011/11UDP-glucose 4-epimerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35770Os.52917.1.S1_at1/119+20575896..20578473transposon protein, putative, Mutator sub-class
LOC_Os09g35780OsAffx.30144.1.S1_at11/119+20587366..20588179expressed protein
LOC_Os09g35790Os.11941.2.S1_at11/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790Os.54707.1.S1_x_at11/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790Os.11941.1.S1_at10/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790OsAffx.30145.1.S1_at7/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35800Os.8507.1.S1_at11/119+20600134..20602522UDP-glucose 4-epimerase, putative, expressed
LOC_Os09g35810Os.8734.1.S1_a_at11/119+20605389..20608644NC domain-containing protein, putative, expressed
LOC_Os09g35820NANA9+20609072..20610125hypothetical protein
LOC_Os09g35830NANA9+20613276..20613862hypothetical protein
LOC_Os09g35840Os.24098.1.S1_a_at4/119+20619099..20621316RNA-binding protein, putative
LOC_Os09g35840Os.56892.1.S1_x_at4/119+20619099..20621316RNA-binding protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0010053biological_processroot epidermal cell differentiation
GO:0046369biological_processgalactose biosynthesis
GO:0005829cellular_componentcytosol
GO:0003978molecular_functionUDP-glucose 4-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8507.1.S1_at--66--7411Chr09:20601296..20601320 (25 bp)
GTGATCCTGCTCAGGTACTTCAACC
LOC_Os09g35800
Os.8507.1.S1_at--732--1931Chr09:20601046..20601157 (25 bp)
ACGGCACCGCGATCAGGGATTACAT
LOC_Os09g35800
Os.8507.1.S1_at--878--331Chr09:20601023..20601047 (25 bp)
ATACATGTAGTGGACCTTGCCGATG
LOC_Os09g35800
Os.8507.1.S1_at--310--6231Chr09:20601002..20601026 (25 bp)
GATGGCCACATTGCCGCACTGGAGA
LOC_Os09g35800
Os.8507.1.S1_at--785--8531Chr09:20600983..20601007 (25 bp)
TGGAGAAGCTCTTCGCTACTCCTGA
LOC_Os09g35800
Os.8507.1.S1_at--960--1991Chr09:20600856..20600990 (25 bp)
ACTCCTGACATTGGTTGTGTGGCTT
LOC_Os09g35800
Os.8507.1.S1_at--599--6591Chr09:20600609..20600633 (25 bp)
GATTGCACTGAGGTTTACGCTTCCA
LOC_Os09g35800
Os.8507.1.S1_at--993--10331Chr09:20600596..20600620 (25 bp)
TTTACGCTTCCACTGACAAGGCCAA
LOC_Os09g35800
Os.8507.1.S1_at--662--3151Chr09:20600376..20600400 (25 bp)
AATTGGGCCAAGAAGAATCCGTACG
LOC_Os09g35800
Os.8507.1.S1_at--1158--3011Chr09:20600361..20600385 (25 bp)
AATCCGTACGGATACAGCGCCAATG
LOC_Os09g35800
Os.8507.1.S1_at--636--10071Chr09:20600325..20600349 (25 bp)
TAGGGCGATCATATTACCACTTATA
LOC_Os09g35800
Target Sequence 
GTGATCCTGCTCAGGTACTTCAACCCCATCGGCGCTCACCGGAGCGGCGACATCGGGGAGGACCCCAGGGGCATCCCCAA
CAACCTTCTTCCGTACATCCAGCAGGTCGCCGTCGGCCGCCGCCCCGAGCTCAACGTCTACGGCGTCGACTACCCAACCA
GGGACGGCACCGCGATCAGGGATTACATACATGTAGTGGACCTTGCCGATGGCCACATTGCCGCACTGGAGAAGCTCTTC
GCTACTCCTGACATTGGTTGTGTGGCTTACAATCTAGGAACAGGGTGTGGAACAACGGTGCTCGAGGTGGTGAAGGCGTT
CGAGGAGGCGTCCGGAAAGAAAATTCCTATCAAGATTTGCCCCAGAAGACCTGGAGATTGCACTGAGGTTTACGCTTCCA
CTGACAAGGCCAAGAAGGAGCTCGGATGGAGTGCTCGGTTTGGAATAGAGGACATGTGCAGGGACCAGTGGAATTGGGCC
AAGAAGAATCCGTACGGATACAGCGCCAATGCTGAGCAGAATTAGGGCGATCATATTACCACTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis