Browse Element(s) Details


Os.8527.2.S1_x_at

Description gb:NM_195878.1
DB_XREF= gi:37533115
TID=Os.8527.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8527 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0052C09.1), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2024011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20200Os.47999.3.S1_x_at1/1110+9813435..9814859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20200OsAffx.10020.1.S1_x_at1/1110+9813435..9814859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20210NANA10+9815777..9816467hypothetical protein
LOC_Os10g20220OsAffx.31069.1.S1_x_at1/1110+9818942..9821803retrotransposon protein, putative, unclassified
LOC_Os10g20230Os.20152.1.S2_at11/1110+9831493..9833702expressed protein
LOC_Os10g20230Os.20152.1.S1_a_at11/1110+9831493..9833702expressed protein
LOC_Os10g20240Os.8527.2.S1_x_at11/1110+9839135..9843093expressed protein
LOC_Os10g20240Os.8527.1.S1_at11/1110+9839135..9843093expressed protein
LOC_Os10g20250Os.13479.1.S1_at11/1110+9843145..9845939expressed protein
LOC_Os10g20260Os.46814.1.S1_at11/1110+9849044..9856261Cellulose synthase family protein, expressed
LOC_Os10g20270Os.44418.2.S1_at7/1110+9858684..9863139hypothetical protein
LOC_Os10g20270Os.44418.1.S1_at1/1110+9858684..9863139hypothetical protein
LOC_Os10g20280OsAffx.20490.1.S1_at11/1110+9866121..9869681transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8527.2.S1_x_at--577--6571Chr10:9840607..9840631 (25 bp)
GATTCTTCGGGCTCAGCAGAGTCAG
LOC_Os10g20240
Os.8527.2.S1_x_at--811--1931Chr10:9840676..9840700 (25 bp)
ACGGCAAGTGCCTATGCTGATATTG
LOC_Os10g20240
Os.8527.2.S1_x_at--132--8871Chr10:9840756..9840780 (25 bp)
TGATGATCTGCCCAAGGTACCTTTG
LOC_Os10g20240
Os.8527.2.S1_x_at--518--6471Chr10:9840772..9840796 (25 bp)
GTACCTTTGGTTAAGAGCCCTAGCT
LOC_Os10g20240
Os.8527.2.S1_x_at--938--5871Chr10:9840786..9840810 (25 bp)
GAGCCCTAGCTCTTCTGTATTAATG
LOC_Os10g20240
Os.8527.2.S1_x_at--1130--8131Chr10:9840891..9840915 (25 bp)
GGAAACTCTTCCTCTGACAAATTCT
LOC_Os10g20240
Os.8527.2.S1_x_at--977--1231Chr10:9841067..9841091 (25 bp)
AGTTGCTTGAGCACCTCTGATGATG
LOC_Os10g20240
Os.8527.2.S1_x_at--988--5531Chr10:9841108..9841132 (25 bp)
GAAACTTTATGGTTGCCTTGGTGCA
LOC_Os10g20240
Os.8527.2.S1_x_at--420--7191Chr10:9841137..9841161 (25 bp)
GTCGGCTACTTCAGAGGTCTCAGTA
LOC_Os10g20240
Os.8527.2.S1_x_at--46--8531Chr10:9841174..9841198 (25 bp)
TGGACGTCCTATTCAGTTACTTATC
LOC_Os10g20240
Os.8527.2.S1_x_at--587--6771Chr10:9841189..9841213 (25 bp)
GTTACTTATCCTAGCAATTGTTGTT
LOC_Os10g20240
Target Sequence 
GATTCTTCGGGCTCAGCAGAGTCAGGTTTAGTGTCAACTAAGGAGGAGACAGCTCCAGGTCATAGGAGAACGGCAAGTGC
CTATGCTGATATTGGATCATGGACTATTACAATTCCTGATGAGGCCAATGGCATCGATGAACAATCATTTGATGATCTGC
CCAAGGTACCTTTGGTTAAGAGCCCTAGCTCTTCTGTATTAATGAATGCCTTCCAATCAAAGACAAGAATGAAGACAAAG
AATGGAGCCAAGAAGTTGGCTGGAGCTGACCAACAGGATGTTGTGGAAACTCTTCCTCTGACAAATTCTCGCTCGTGCCA
GGGGTTTGATGGGTTGTTTCAAAGAAGCAAAAGTTGCTTGAGCACCTCTGATGATGAGGATAACTGCAATAAGAAACTTT
ATGGTTGCCTTGGTGCATTCCGTCGGCTACTTCAGAGGTCTCAGTATCAAGTTCAATATGGACGTCCTATTCAGTTACTT
ATCCTAGCAATTGTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8527.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis