Browse Element(s) Details


Os.8552.1.S1_at

Description gb:AK120336.1
DB_XREF= gi:37989959
TID=Os.8552.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8552 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059M23, full insert sequence.
FL= gb:AK120336.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4482010/11glutamyl-tRNA amidotransferase, C subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44780Os.54150.1.S1_at11/113+25205168..25208480elongation factor Tu family protein, putative, expressed
LOC_Os03g44800OsAffx.13351.1.S1_at11/113+25218463..25222121expressed protein
LOC_Os03g44810Os.54281.1.S1_at11/113+25222398..25227209SPX domain containing protein, expressed
LOC_Os03g44810OsAffx.29100.1.S1_at1/113+25222398..25227209SPX domain containing protein, expressed
LOC_Os03g44820Os.8552.1.S1_at10/113+25230628..25232697glutamyl-tRNA amidotransferase, C subunit family protein, expressed
LOC_Os03g44830Os.18753.1.S1_at11/113+25233636..25240504expressed protein
LOC_Os03g44840Os.18926.1.S1_at11/113+25251861..25256081expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8552.1.S1_at--449--5431Chr03:25230782..25230806 (25 bp)
GAACCAGTCTGCGAGGAACCAATGG
LOC_Os03g44820
Os.8552.1.S1_at--115--951Chr03:25230795..25230819 (25 bp)
AGGAACCAATGGTTGCTGCTGCGGC
LOC_Os03g44820
Os.8552.1.S1_at--780--10851Chr03:25231500..25231522 (23 bp)
TTGGTTTGGGCAACTTCAAGCCGTC
LOC_Os03g44820
Os.8552.1.S1_at--1092--2651Chr03:25231515..25231539 (25 bp)
AAGCCGTCGATCTTGAATCTGTTGA
LOC_Os03g44820
Os.8552.1.S1_at--718--3051Chr03:25231530..25231554 (25 bp)
AATCTGTTGAGCCTTCACTTAGAGC
LOC_Os03g44820
Os.8552.1.S1_at--203--8931NONE
TGAGCCTTCACTTAGAGCTGGTACT
NONE
Os.8552.1.S1_at--842--6991Chr03:25232296..25232320 (25 bp)
GTACTGCGGCAGGTAATTCATTGAG
LOC_Os03g44820
Os.8552.1.S1_at--59--2751Chr03:25232323..25232347 (25 bp)
AAGACAGGCCTGAAACATTTACTAA
LOC_Os03g44820
Os.8552.1.S1_at--860--6351Chr03:25232432..25232456 (25 bp)
GATGCCATAATAGAGTCTGTCCCAA
LOC_Os03g44820
Os.8552.1.S1_at--3--7191Chr03:25232446..25232470 (25 bp)
GTCTGTCCCAAGCTATGATGATCCA
LOC_Os03g44820
Os.8552.1.S1_at--397--6371Chr03:25232465..25232489 (25 bp)
GATCCATACATCAAGGTGCCAAGAG
LOC_Os03g44820
Target Sequence 
GAACCAGTCTGCGAGGAACCAATGGTTGCTGCTGCGGCGGCGTTCCCTCTCCTCCTCACCTCCCTACGTGACGCCCGGTA
TCCCGGCGGCGGCGGCGGCGGCAGGGAGTGGGGCTCTCGAGCCGCCGGACCTGCCCCGCCTCGCCAACGCGGCACGCATC
TCTCTCTCGCCGGAAGAGGCTGAGGAGTTCGCGCCGAAGATTCGGCAGGTGGTGGATTGGTTTGGGCAACTTCAAGCCGT
CGATCTTGAATCTGTTGAGCCTTCACTTAGAGCTGGTACTGCGGCAGGTAATTCATTGAGAGAAGACAGGCCTGAAACAT
TTACTAACAGAGATGCCATAATAGAGTCTGTCCCAAGCTATGATGATCCATACATCAAGGTGCCAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis