Browse Element(s) Details


Os.8569.1.S1_at

Description gb:AK060559.1
DB_XREF= gi:32970577
TID=Os.8569.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.8569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-E08, full insert sequence.
FL= gb:AK060559.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4888011/11beta-carotene hydroxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48850Os.49507.1.S1_at11/114+28912714..289155861-aminocyclopropane-1-carboxylate synthase, putative, expressed
LOC_Os04g48860Os.5357.1.S1_at11/114+28930098..28931792expressed protein
LOC_Os04g48870OsAffx.26533.1.S1_at11/114+28933894..28934866expressed protein
LOC_Os04g48870Os.24786.1.S1_s_at11/114+28933894..28934866expressed protein
LOC_Os04g48880Os.8569.1.S1_at11/114+28938119..28940187beta-carotene hydroxylase, putative, expressed
LOC_Os04g48890OsAffx.26534.1.S1_at11/114+28941787..28942143hypothetical protein
LOC_Os04g48900NANA4+28949026..28951725retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os04g48910NANA4+28952146..28954859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g48920NANA4+28955475..28958400retrotransposon protein, putative, unclassified
LOC_Os04g48930Os.49111.1.S1_at9/114+28959795..28962564ferric-chelate reductase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016119biological_processcarotene metabolism
GO:0042411molecular_functionbeta-carotene hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8569.1.S1_at--944--9951Chr04:28939522..28939546 (25 bp)
TACCGTATGGGCTGTTTCTTGGACC
LOC_Os04g48880
Os.8569.1.S1_at--543--3631Chr04:28939715..28939739 (25 bp)
CTTGCGAGAATCAACCGGAGCTTGT
LOC_Os04g48880
Os.8569.1.S1_at--454--1571Chr04:28939761..28939785 (25 bp)
AGCTAGCAAGACTGCGCCTGTCGAG
LOC_Os04g48880
Os.8569.1.S1_at--654--5911Chr04:28939783..28939807 (25 bp)
GAGCTAGCAGAATTGCCTTTGCCTT
LOC_Os04g48880
Os.8569.1.S1_at--1000--171Chr04:28939813..28939837 (25 bp)
ATTTTTTGTATTTCTGGCCGCTTCG
LOC_Os04g48880
Os.8569.1.S1_at--437--5571Chr04:28939840..28939864 (25 bp)
GACTCCATTAATTGTCGGTACCGGA
LOC_Os04g48880
Os.8569.1.S1_at--83--8191Chr04:28939885..28939909 (25 bp)
GGAAGCGCTTCGAGTATACGACGAT
LOC_Os04g48880
Os.8569.1.S1_at--213--10271Chr04:28939940..28939964 (25 bp)
TTTGATTGTGGCCTGTGGCATGCAT
LOC_Os04g48880
Os.8569.1.S1_at--195--10751Chr04:28940018..28940042 (25 bp)
TTGAATTTCACTGCGCCAACGTTTT
LOC_Os04g48880
Os.8569.1.S1_at--118--7511Chr04:28940045..28940069 (25 bp)
GTGGAGACGTTGTGCGTCCAGTCCC
LOC_Os04g48880
Os.8569.1.S1_at--178--7271Chr04:28940060..28940084 (25 bp)
GTCCAGTCCCCTGTCTTGTAAGAAG
LOC_Os04g48880
Target Sequence 
TACCGTATGGGCTGTTTCTTGGACCCAAGGAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGA
ATCAACCGGAGCTTGTGATTTTGACGGCGGCAATTGCAGCTAGCAAGACTGCGCCTGTCGAGCTAGCAGAATTGCCTTTG
CCTTGCAAGATTTTTTGTATTTCTGGCCGCTTCGTCGACTCCATTAATTGTCGGTACCGGAGAGAAGGGGACTCCAGAAG
CGGAAGCGCTTCGAGTATACGACGATGTGGCAGCGGTGAAGAGCACAGTATATTTGTTTGATTGTGGCCTGTGGCATGCA
TGNGTNTCTGNGGNTGAACATTGTAAGGAGGATGTTNTGTGGGATGGTTATTCTTTGAATTTCACTGCGCCAACGTTTTT
GGTGGAGACGTTGTGCGTCCAGTCCCCTGTCTTGTAAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis