Browse Element(s) Details


Os.8580.1.S1_at

Description gb:AK103713.1
DB_XREF= gi:32988922
TID=Os.8580.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8580 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033137H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033137H02, full insert sequence.
FL= gb:AK103713.1 gb:AK061349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3078011/11Mov34/MPN/PAD-1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30750OsAffx.14053.1.S1_at11/114+18190528..18192911expressed protein
LOC_Os04g30760Os.22815.1.S1_at11/114+18195311..182002503-oxoacyl-reductase, chloroplast precursor, putative, expressed
LOC_Os04g30770OsAffx.14054.1.S1_at11/114+18205252..18206991Glycosyl hydrolases family 18 protein, expressed
LOC_Os04g30780Os.8580.1.S1_at11/114+18213820..18218312Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g30790Os.22695.1.S1_s_at11/114+18219938..18223014expressed protein
LOC_Os04g30800NANA4+18226935..18230195ER lumen protein retaining receptor, putative
LOC_Os04g30810NANA4+18232182..18233825F-box domain containing protein
LOC_Os04g30820OsAffx.3959.1.S1_at11/114+18236447..18237332hypothetical protein
LOC_Os04g30830OsAffx.26260.1.S1_at10/114+18238809..18240694F-box domain containing protein
LOC_Os04g30840OsAffx.14056.1.S1_at11/114+18242556..18242876hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8580.1.S1_at--669--2131Chr04:18215026..18215050 (25 bp)
ACAGTGTGATTTTGACCGCCTTAAA
LOC_Os04g30780
Os.8580.1.S1_at--790--3171Chr04:18215003..18215027 (25 bp)
AATTGTCAACTGCTCCATTCATGGA
LOC_Os04g30780
Os.8580.1.S1_at--55--8211Chr04:18214969..18214993 (25 bp)
GGAATTTCTGATTGGCTGCATGGAT
LOC_Os04g30780
Os.8580.1.S1_at--187--5871Chr04:18214560..18214584 (25 bp)
GAGCCATTGCCAGAAGAAGACCCAT
LOC_Os04g30780
Os.8580.1.S1_at--625--171Chr04:18214527..18214551 (25 bp)
ATTTTCAAGCCGATTCCTGAGCCGT
LOC_Os04g30780
Os.8580.1.S1_at--370--5871Chr04:18214509..18214533 (25 bp)
GAGCCGTCACGTTTGGAGGGTTATC
LOC_Os04g30780
Os.8580.1.S1_at--208--7831Chr04:18214060..18214084 (25 bp)
GGTCAGAATTTCAACAGGCTCTACT
LOC_Os04g30780
Os.8580.1.S1_at--595--3131Chr04:18213958..18213982 (25 bp)
AATTTTGCCTTGTGCTTTATGCCTA
LOC_Os04g30780
Os.8580.1.S1_at--604--591Chr04:18213940..18213964 (25 bp)
ATGCCTATTATACCTTTTGCCAAGA
LOC_Os04g30780
Os.8580.1.S1_at--62--2371Chr04:18213915..18213939 (25 bp)
AAAGCCAGAGCCTATTGTACCAATC
LOC_Os04g30780
Os.8580.1.S1_at--559--8831Chr04:18213859..18213883 (25 bp)
TGATTTTATCGCTTGGTTGGGTCTC
LOC_Os04g30780
Target Sequence 
ACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGG
ATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGG
CTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCC
CATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATA
TTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGA
GTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTATACCTTTTGCCAAGAA
AAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATGATAAATTGATTTTATCGCTTGGTTGGGTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis