Browse Element(s) Details


Os.8610.1.S1_at

Description gb:AK071238.1
DB_XREF= gi:32981261
TID=Os.8610.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8610 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023085B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085B09, full insert sequence.
FL= gb:AK071238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2326011/11Microsomal signal peptidase 18 kDa subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23230Os.52531.1.S1_at11/115+13180482..13182219expressed protein
LOC_Os05g23240OsAffx.26977.1.S1_at11/115+13183290..13184183Zinc knuckle family protein
LOC_Os05g23250OsAffx.14788.1.S1_at11/115+13191900..13199470Leucine Rich Repeat family protein, expressed
LOC_Os05g23260Os.8610.1.S1_at11/115+13204696..13208436Microsomal signal peptidase 18 kDa subunit, putative, expressed
LOC_Os05g23270OsAffx.26978.1.S1_at7/115+13208296..13209842hypothetical protein
LOC_Os05g23280OsAffx.1647.1.S1_at1/115+13211817..13214198retrotransposon protein, putative, unclassified
LOC_Os05g23290Os.9332.2.S1_x_at2/115+13215584..13220428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23290OsAffx.22722.1.S1_x_at1/115+13215584..13220428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23290Os.9332.2.S1_at1/115+13215584..13220428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23300NANA5+13222759..13224075retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23310NANA5+13228106..13228342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23320Os.27127.1.S1_a_at11/115+13230517..13234739expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016020cellular_componentmembrane
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8610.1.S1_at--204--1871Chr05:13207513..13207537 (25 bp)
ACGACCGTCTTCTTTATGCACATGG
LOC_Os05g23260
Os.8610.1.S1_at--332--3271Chr05:13207554..13207578 (25 bp)
CAACATCACATTATGGGACGGGCTG
LOC_Os05g23260
Os.8610.1.S1_at--726--911Chr05:13207669..13207691 (23 bp)
AGGCTTTCTTCCATATGTCGGGTGG
LOC_Os05g23260
Os.8610.1.S1_at--867--7191Chr05:13207683..13207707 (25 bp)
GTCGGGTGGGTTACAATCATCATGA
LOC_Os05g23260
Os.8610.1.S1_at--169--10351Chr05:13207719..13208000 (25 bp)
TTTATAAAGTACCTGCTCATCGGCG
LOC_Os05g23260
Os.8610.1.S1_at--542--8651Chr05:13208004..13208028 (25 bp)
TGGGCTTGCTGGTCATTACATCGAA
LOC_Os05g23260
Os.8610.1.S1_at--459--4111Chr05:13208062..13208086 (25 bp)
CGCAAACATTAGAGGCCAGTGGCTT
LOC_Os05g23260
Os.8610.1.S1_at--338--7531Chr05:13208080..13208104 (25 bp)
GTGGCTTATACACTCCTTAGGGAAG
LOC_Os05g23260
Os.8610.1.S1_at--650--1891Chr05:13208171..13208195 (25 bp)
ACGTTTATTCTGGATCTGATGTAAC
LOC_Os05g23260
Os.8610.1.S1_at--511--6271Chr05:13208188..13208212 (25 bp)
GATGTAACATCTCCTATAGTCCTAG
LOC_Os05g23260
Os.8610.1.S1_at--837--4451Chr05:13208330..13208354 (25 bp)
GCCTCAGGCTTTTTCACTTGTGGTA
LOC_Os05g23260
Target Sequence 
ACGACCGTCTTCTTTATGCACATGGGCNAGCTTTGGCTTCACCAACATCACATTATGGGACGGGCTGNNAGGCTTTCTTC
CATATGTCGGGTGGGTTACAATCATCATGACTGAGAAACCATTTATAAAGTACCTGCTCATCGGCGCTCTGGGCTTGCTG
GTCATTACATCGAAAGAGTAAAACATCAACTTCACCCAAGAATTTAGCGCAAACATTAGAGGCCAGTGGCTTATACACTC
CTTAGGGAAGATACCTTTTGTTTCACCATGTTATTGGGAACAAAAAGACATGCTTGCACCAATGGATGAAAAAAAAACGT
TTATTCTGGATCTGATGTAACATCTCCTATAGTCCTAGTTAAAGATTAAATNTGATTTATTGCGTTGGATGAAATTTACT
TATAAAAAATTCCTTGTATGACACTAAACTAGTACTATGAACTATGAAGTGGTCAATGGTTGTGACCNNNANNNCGCCTC
AGGCTTTTTCACTTGTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8610.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis