Browse Element(s) Details


Os.52531.1.S1_at

Description gb:AK067752.1
DB_XREF= gi:32977770
TID=Os.52531.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013114A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114A11, full insert sequence.
FL= gb:AK067752.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2323011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23200OsAffx.26976.1.S1_at11/115+13157706..13160329expressed protein
LOC_Os05g23200Os.21222.1.S1_at3/115+13157706..13160329expressed protein
LOC_Os05g23210Os.46306.1.S1_x_at2/115+13161877..13171652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23210Os.14491.2.S1_x_at1/115+13161877..13171652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23210Os.47463.1.S1_x_at1/115+13161877..13171652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23220Os.29976.1.S1_at4/115+13174217..13177210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23220Os.27037.1.A1_at1/115+13174217..13177210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23230Os.52531.1.S1_at11/115+13180482..13182219expressed protein
LOC_Os05g23240OsAffx.26977.1.S1_at11/115+13183290..13184183Zinc knuckle family protein
LOC_Os05g23250OsAffx.14788.1.S1_at11/115+13191900..13199470Leucine Rich Repeat family protein, expressed
LOC_Os05g23260Os.8610.1.S1_at11/115+13204696..13208436Microsomal signal peptidase 18 kDa subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52531.1.S1_at--381--6691Chr05:13181620..13181644 (25 bp)
GTTGCCGGAGGTCATGCCGATCCAT
LOC_Os05g23230
Os.52531.1.S1_at--387--7731Chr05:13181669..13181693 (25 bp)
GGTGTCATTTACATGGTCTCGTCGG
LOC_Os05g23230
Os.52531.1.S1_at--5--1631Chr05:13181817..13181841 (25 bp)
AGCGGCAGTACTTGATCGGTCTCGA
LOC_Os05g23230
Os.52531.1.S1_at--458--8851Chr05:13181829..13181853 (25 bp)
TGATCGGTCTCGACATACGCAACGA
LOC_Os05g23230
Os.52531.1.S1_at--686--311Chr05:13181843..13181867 (25 bp)
ATACGCAACGAGAGTCTCCTGTCGT
LOC_Os05g23230
Os.52531.1.S1_at--534--9371Chr05:13181895..13181919 (25 bp)
TCGACCGGCCTGATCTCATGGGTTT
LOC_Os05g23230
Os.52531.1.S1_at--342--6831Chr05:13181916..13181940 (25 bp)
GTTTCGACGTGTCCAAATGCCTTGA
LOC_Os05g23230
Os.52531.1.S1_at--649--591Chr05:13181932..13181956 (25 bp)
ATGCCTTGACGAACATTGCCTGTGC
LOC_Os05g23230
Os.52531.1.S1_at--33--4751Chr05:13181990..13182014 (25 bp)
GCTGAGGTGCTTATATACGGTTCCA
LOC_Os05g23230
Os.52531.1.S1_at--1--1671Chr05:13182042..13182066 (25 bp)
AGCCCAAACTCTCGTTGATCTGAAT
LOC_Os05g23230
Os.52531.1.S1_at--370--7831Chr05:13182122..13182146 (25 bp)
GGTAAACTTCCCAAACAGCTATAGC
LOC_Os05g23230
Target Sequence 
GTTGCCGGAGGTCATGCCGATCCATCCCATCCTGAGCACGAAGCAAGACGGTGTCATTTACATGGTCTCGTCGGCTGATG
ACCTCGCGTCCGCGGGTCGTGAAGACAGCTCCGCCTCCGAGTCCGAGGGGTGGGACTCTGATGTCGGGGACGAGAGCGAC
GACGACGACGAGGAAGACGGCGTCCTCGTTGAGGAGGAGCGGCAGTACTTGATCGGTCTCGACATACGCAACGAGAGTCT
CCTGTCGTGGAGACGTCTCCCGGGTAGCGGCTATCTCGACCGGCCTGATCTCATGGGTTTCGACGTGTCCAAATGCCTTG
ACGAACATTGCCTGTGCCCTCCCGCCGACGCCGCTCCGAACACTGATGGGGCTGAGGTGCTTATATACGGTTCCAGCTAC
ACGCAAGAGGAAGTTGCCAAGCAGCCCAAACTCTCGTTGATCTGAATTACCTTTTCTCTGTATAGGAGTCAATGTTTTAA
ATAGTGGGCTAAGGCATTTAGCGGTAAACTTCCCAAACAGCTATAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis