Browse Element(s) Details


OsAffx.26976.1.S1_at

Description tigr:9633.m02047
TID=OsAffx.26976.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2320011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23160NANA5+13136556..13137184retrotransposon protein, putative, unclassified
LOC_Os05g23170NANA5+13138723..13140126retrotransposon protein, putative, unclassified
LOC_Os05g23180NANA5+13143068..13145361transposon protein, putative, unclassified
LOC_Os05g23190Os.28943.1.S1_x_at1/115+13146245..13149565retrotransposon protein, putative, unclassified
LOC_Os05g23194Os.53905.1.S1_at10/115+13152287..13153010expressed protein
LOC_Os05g23194OsAffx.8954.1.S1_x_at6/115+13152287..13153010expressed protein
LOC_Os05g23200OsAffx.26976.1.S1_at11/115+13157706..13160329expressed protein
LOC_Os05g23200Os.21222.1.S1_at3/115+13157706..13160329expressed protein
LOC_Os05g23210Os.46306.1.S1_x_at2/115+13161877..13171652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23210Os.14491.2.S1_x_at1/115+13161877..13171652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23210Os.47463.1.S1_x_at1/115+13161877..13171652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23220Os.29976.1.S1_at4/115+13174217..13177210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23220Os.27037.1.A1_at1/115+13174217..13177210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23230Os.52531.1.S1_at11/115+13180482..13182219expressed protein
LOC_Os05g23240OsAffx.26977.1.S1_at11/115+13183290..13184183Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26976.1.S1_at--636--1952Chr06:12618779..12618803 (25 bp)
ACTGGCCTGCCATTTGACATTTCTT
NONE
OsAffx.26976.1.S1_at--1034--8352Chr05:13158669..13158693 (25 bp)
GGCGGCAAGATCGACTCCAGATCGT
LOC_Os05g23200
OsAffx.26976.1.S1_at--324--1251Chr05:13158651..13158675 (25 bp)
AGATCGTCGTTTCTAGACGGCGCGC
LOC_Os05g23200
OsAffx.26976.1.S1_at--371--7271Chr05:13158602..13158626 (25 bp)
GTCCAATTCAGCGTCCGACAGGGAG
LOC_Os05g23200
OsAffx.26976.1.S1_at--803--3391Chr05:13158570..13158594 (25 bp)
CAGCATCATGTACATCCGGCCGTTG
LOC_Os05g23200
OsAffx.26976.1.S1_at--337--10692Chr05:13158460..13158484 (25 bp)
TTGAACAAGTTATCCCGTCCTAATC
LOC_Os05g23200
OsAffx.26976.1.S1_at--198--2271Chr05:13158434..13158458 (25 bp)
AAATCCCACCTGCAGATCAAACGAG
LOC_Os05g23200
OsAffx.26976.1.S1_at--117--2392Chr05:13158416..13158440 (25 bp)
AAACGAGGCTTTGCTTGATACGAAC
LOC_Os05g23200
OsAffx.26976.1.S1_at--480--10692Chr06:12619425..12619449 (25 bp)
TTGCCAACCGGCGTCAGAACATGTT
NONE
OsAffx.26976.1.S1_at--384--9712Chr06:12619475..12619499 (25 bp)
TCAACCCTGCAACAAGCTAGCGTAG
NONE
OsAffx.26976.1.S1_at--269--1573Chr06:12619489..12619513 (25 bp)
AGCTAGCGTAGAGGGTCTGCGCCAT
NONE
Target Sequence 
ACTGGCCTGCCATTTGACATTTCTTGGCGGCGGCAAGATCGACTCCAGATCGTCGTTTCTAGACGGCGCGCAGCGCACCG
GCTCGACGACGGCTGGTCCAATTCAGCGTCCGACAGGGAGACAGAGGCAGCATCATGTACATCCGGCCGTTGCACCGATG
GGAGACAAACGATGCTGATTAATTGCTTGAACAAGTTATCCCGTCCTAATCCAAATCCCACCTGCAGATCAAACGAGGCT
TTGCTTGATACGAACAAAATCGGCGGCGGCGGCGCGGCGGCAGACTCACGGTGCAACGCATCGTCCATCCAACCGACGAC
ACGATCGTCCCCCAGCGGCGTCATTGGCAAGCAGGCGATGGTTGCCAACCGGCGTCAGAACATGTTGACTCCAATGACTC
AAATGCTTACCTCAACCCTGCAACAAGCTAGCGTAGAGGGTCTGCGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis