Browse Element(s) Details


OsAffx.8954.1.S1_x_at

Description gb:NM_193620.1
DB_XREF= gi:34914323
GEN=B1112D09.10
TID=OsAffx.8954.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1112D09.10 (B1112D09.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g231946/11expressed protein
LOC_Os11g435402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23150Os.10731.2.A1_at1/115+13125558..13132291retrotransposon protein, putative, unclassified
LOC_Os05g23160NANA5+13136556..13137184retrotransposon protein, putative, unclassified
LOC_Os05g23170NANA5+13138723..13140126retrotransposon protein, putative, unclassified
LOC_Os05g23180NANA5+13143068..13145361transposon protein, putative, unclassified
LOC_Os05g23190Os.28943.1.S1_x_at1/115+13146245..13149565retrotransposon protein, putative, unclassified
LOC_Os05g23194Os.53905.1.S1_at10/115+13152287..13153010expressed protein
LOC_Os05g23194OsAffx.8954.1.S1_x_at6/115+13152287..13153010expressed protein
LOC_Os05g23200OsAffx.26976.1.S1_at11/115+13157706..13160329expressed protein
LOC_Os05g23200Os.21222.1.S1_at3/115+13157706..13160329expressed protein
LOC_Os05g23210Os.46306.1.S1_x_at2/115+13161877..13171652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23210Os.14491.2.S1_x_at1/115+13161877..13171652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23210Os.47463.1.S1_x_at1/115+13161877..13171652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23220Os.29976.1.S1_at4/115+13174217..13177210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23220Os.27037.1.A1_at1/115+13174217..13177210transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8954.1.S1_x_at--1086--9132Chr05:13152861..13152885 (25 bp)
TGCGGTCTGCCGGAGGACAACAACA
LOC_Os05g23194
OsAffx.8954.1.S1_x_at--85--8152Chr05:13152847..13152871 (25 bp)
GGACAACAACAACGATCCATCGGCA
LOC_Os05g23194
OsAffx.8954.1.S1_x_at--206--2212Chr05:13152839..13152863 (25 bp)
ACAACGATCCATCGGCAATCCTGTG
LOC_Os05g23194
OsAffx.8954.1.S1_x_at--743--9233Chr11:25773402..25773426 (25 bp)
TCCATCGGCAATCCTGTGCGCGCGG
LOC_Os11g43540
OsAffx.8954.1.S1_x_at--530--4251Chr01:22512672..22512696 (25 bp)
CCGTGCGTCAATGGTGTCGAGATGT
NONE
OsAffx.8954.1.S1_x_at--638--2971Chr01:22512663..22512687 (25 bp)
AATGGTGTCGAGATGTCTGCCCGTG
NONE
OsAffx.8954.1.S1_x_at--632--1313Chr11:25773446..25773470 (25 bp)
AGATGTCTGCCCGTGTCGCCGTTCG
LOC_Os11g43540
OsAffx.8954.1.S1_x_at--1128--9312Chr05:13152773..13152797 (25 bp)
TCGCCGTTCGGCGATATTTGCCCAG
LOC_Os05g23194
OsAffx.8954.1.S1_x_at--532--1571Chr01:22509145..22509169 (25 bp)
AGCTCACGGCGCACAACGAATCGAC
NONE
OsAffx.8954.1.S1_x_at--435--9691Chr01:22509142..22509166 (25 bp)
TCACGGCGCACAACGAATCGACGAT
NONE
OsAffx.8954.1.S1_x_at--242--1851Chr01:22509130..22509154 (25 bp)
ACGAATCGACGATAGAGGTTGGCTG
NONE
Target Sequence 
TGCGGTCTGCCGGAGGACAACAACAACGATCCATCGGCAATCCTGTGCGCGCGGCCGTGCGTCAATGGTGTCGAGATGTC
TGCCCGTGTCGCCGTTCGGCGATATTTGCCCAGCCTCTTCCACCACCGAGCTCACGGCGCACAACGAATCGACGATAGAG
GTTGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8954.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis