Browse Element(s) Details


Os.53905.1.S1_at

Description gb:AK100725.1
DB_XREF= gi:32985934
TID=Os.53905.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53905 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023117C23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023117C23, full insert sequence.
FL= gb:AK100725.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2319410/11expressed protein
LOC_Os11g435401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23150Os.10731.2.A1_at1/115+13125558..13132291retrotransposon protein, putative, unclassified
LOC_Os05g23160NANA5+13136556..13137184retrotransposon protein, putative, unclassified
LOC_Os05g23170NANA5+13138723..13140126retrotransposon protein, putative, unclassified
LOC_Os05g23180NANA5+13143068..13145361transposon protein, putative, unclassified
LOC_Os05g23190Os.28943.1.S1_x_at1/115+13146245..13149565retrotransposon protein, putative, unclassified
LOC_Os05g23194Os.53905.1.S1_at10/115+13152287..13153010expressed protein
LOC_Os05g23194OsAffx.8954.1.S1_x_at6/115+13152287..13153010expressed protein
LOC_Os05g23200OsAffx.26976.1.S1_at11/115+13157706..13160329expressed protein
LOC_Os05g23200Os.21222.1.S1_at3/115+13157706..13160329expressed protein
LOC_Os05g23210Os.46306.1.S1_x_at2/115+13161877..13171652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23210Os.14491.2.S1_x_at1/115+13161877..13171652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23210Os.47463.1.S1_x_at1/115+13161877..13171652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23220Os.29976.1.S1_at4/115+13174217..13177210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23220Os.27037.1.A1_at1/115+13174217..13177210transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53905.1.S1_at--721--4053Chr11:25773288..25773312 (25 bp)
CGATCCATCAGCGACTCAGGAGGCT
LOC_Os11g43540
Os.53905.1.S1_at--971--3932Chr05:13152524..13152548 (25 bp)
CGGCGGAGTGACATCACGGTGCAAT
LOC_Os05g23194
Os.53905.1.S1_at--141--7632Chr05:13152499..13152523 (25 bp)
GGGAAAATGGCTTTGTTCAGAGATT
LOC_Os05g23194
Os.53905.1.S1_at--991--10512Chr05:13152484..13152508 (25 bp)
TTCAGAGATTGTCGTTGCCTCGTTG
LOC_Os05g23194
Os.53905.1.S1_at--710--10632Chr05:13152470..13152494 (25 bp)
TTGCCTCGTTGGATCGTTAATCTGT
LOC_Os05g23194
Os.53905.1.S1_at--989--6392Chr05:13152459..13152483 (25 bp)
GATCGTTAATCTGTCTGTAGCAGTA
LOC_Os05g23194
Os.53905.1.S1_at--850--6953Chr11:25773808..25773832 (25 bp)
GTAGCAGTAGTTTGAGAATCCGGAA
NONE
Os.53905.1.S1_at--839--5252Chr05:13152428..13152452 (25 bp)
GAATCCGGAATATTTCTCAGGGAAA
LOC_Os05g23194
Os.53905.1.S1_at--705--7413Chr11:25773857..25774178 (25 bp)
GTGATTCTCGTTGGTATTCTACTTT
NONE
Os.53905.1.S1_at--1007--9992Chr05:13152329..13152353 (25 bp)
TAGCGTATACTTCTAGTATTCTGAT
LOC_Os05g23194
Os.53905.1.S1_at--906--10332Chr05:13152287..13152311 (25 bp)
TTTAATCAGCATACGCTTCAATCTG
NONE
Target Sequence 
CGATCCATCAGCGACTCAGGAGGCTGCGGCGTTCACCAGTGGCGGCGATGGCATGCATGTCCAGGCGATGGGCCGAGCGC
GGCCGCGGCGTCTGCGGTCTGCCGGAGGACAACAACAACGATCCATCGGCAATCCTGTGCGCGCGGCCGTGCGTCAATGG
TGTCGTGATGTCTGCCCGTGTCGCCGTTCGGCGATATTTGCCCAGGTGGTGGACGGCGGAGTGACATCACGGTGCAATGG
GAAAATGGCTTTGTTCAGAGATTGTCGTTGCCTCGTTGGATCGTTAATCTGTCTGTAGCAGTAGTTTGAGAATCCGGAAT
ATTTCTCAGGGAAATAATCTTTGTGATTCTCGTTGGTATTCTACTTTTTTATTTTTAAAGTATGGGCGGGGTATATGTAT
GAATTAAATAGCGTATACTTCTAGTATTCTGATTATGATTGTACATTATTTTTAATCAGCATACGCTTCAATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis