Browse Element(s) Details


Os.8618.1.S1_at

Description gb:AK071192.1
DB_XREF= gi:32981215
TID=Os.8618.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087E13, full insert sequence.
FL= gb:AK071192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4481011/11AUX/IAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44780Os.53939.1.S1_at11/115+25944983..25948154expressed protein
LOC_Os05g44786OsAffx.31479.4.S1_x_at9/115+25951871..25957958AT hook motif-containing protein, putative
LOC_Os05g44786OsAffx.31479.1.S1_x_at9/115+25951871..25957958AT hook motif-containing protein, putative
LOC_Os05g44792OsAffx.31479.5.S1_x_at9/115+25959745..25966219hypothetical protein
LOC_Os05g44792Os.49246.1.S1_x_at1/115+25959745..25966219hypothetical protein
LOC_Os05g44800Os.50163.1.S1_at11/115+25966667..25969496expressed protein
LOC_Os05g44810Os.8618.1.S1_at11/115+25969709..25973061AUX/IAA family protein, expressed
LOC_Os05g44820OsAffx.4615.1.S1_at11/115+25974830..25975385hypothetical protein
LOC_Os05g44830Os.7307.3.S1_x_at1/115+25979998..25980638transposon protein, putative, unclassified
LOC_Os05g44840NANA5+25981663..25983092hypothetical protein
LOC_Os05g44850NANA5+25984705..25985577retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g44860NANA5+25986960..25988447retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g44870NANA5+25991581..25993650Zinc knuckle family protein
LOC_Os05g44880NANA5+25996702..26002802retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8618.1.S1_at--397--471Chr05:25970919..25970943 (25 bp)
ATCTGCTGTTGAAGAGTTGTTCCGT
LOC_Os05g44810
Os.8618.1.S1_at--208--6711Chr05:25970787..25970925 (25 bp)
GTTCCGTGGTTTTCTTGAAGCTCAA
LOC_Os05g44810
Os.8618.1.S1_at--735--5311Chr05:25970230..25970251 (22 bp)
GAAGGTATTTGTTTCGACTGTTAAG
LOC_Os05g44810
Os.8618.1.S1_at--412--8871Chr05:25970192..25970216 (25 bp)
TGAGGAGGTCAGAACTTCCCCATGA
LOC_Os05g44810
Os.8618.1.S1_at--102--5671Chr05:25969940..25970193 (25 bp)
GACATGATTGGAGCTGACCCTGTGA
LOC_Os05g44810
Os.8618.1.S1_at--655--2271Chr05:25969909..25969933 (25 bp)
AAATCGTTGATATTAGGGTCCAGAC
LOC_Os05g44810
Os.8618.1.S1_at--733--10071Chr05:25969896..25969920 (25 bp)
TAGGGTCCAGACATATCAATTGTGC
LOC_Os05g44810
Os.8618.1.S1_at--971--10811Chr05:25969877..25969901 (25 bp)
TTGTGCAAACCATAGTCCATCACCT
LOC_Os05g44810
Os.8618.1.S1_at--1102--7971Chr05:25969845..25969869 (25 bp)
GGATGACCTGTTTTTGGCTTGTACA
LOC_Os05g44810
Os.8618.1.S1_at--676--291Chr05:25969799..25969823 (25 bp)
ATAGCATCTTGCAGGTGCAGTGGAC
LOC_Os05g44810
Os.8618.1.S1_at--1035--7031Chr05:25969760..25969784 (25 bp)
GTAAATGACCTACTCTTTTTCAGAT
LOC_Os05g44810
Target Sequence 
ATCTGCTGTTGAAGAGTTGTTCCGTGGTTTTCTTGAAGCTCAAAAAGATCTATCTTGTGCTGAAAGTGGAGAGCAAGGGG
CAGAAGACAAAATATTTTCAGGGTTGTTNGGATGGAACTNGGTGTATACACTTTANGTATATGAANGACAATGATGGAGA
CAGAATGTTNANGCTGGGGACATACCATGGAAGGTATTTGTTTCGACTGTTAAGAGGTTGAGGGTTATGAGGAGGTCAGA
ACTTCCCCATGACATGATTGGAGCTGACCCTGTGAAGTAGCAAATCGTTGATATTAGGGTCCAGACATATCAATTGTGCA
AACCATAGTCCATCACCTTTCTGGGGGATGACCTGTTTTTGGCTTGTACAGATGATTATGATAATGGGAAAATAGCATCT
TGCAGGTGCAGTGGACAAACTGCATATTTTGTAAATGACCTACTCTTTTTCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis