Browse Element(s) Details


Os.8626.1.S1_a_at

Description gb:AK073485.1
DB_XREF= gi:32983508
TID=Os.8626.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0038D11.19 (P0038D11.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043A18, full insert sequence.
FL= gb:AK073485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4597011/11expressed protein
LOC_Os10g3384011/11expressed protein
LOC_Os11g066601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45920OsAffx.11483.1.S1_at11/111+26416385..26416963hypothetical protein
LOC_Os01g45930NANA1+26419742..26420167hypothetical protein
LOC_Os01g45940OsAffx.2245.1.S1_at10/111+26422086..26422434hypothetical protein
LOC_Os01g45960Os.21836.1.S1_at11/111+26433684..26438061hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g45970Os.8626.1.S1_a_at11/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.2.S1_at11/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.3.S1_s_at7/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.1.S1_x_at6/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.3.S1_x_at4/111+26438803..26440973expressed protein
LOC_Os01g45990Os.50245.1.S1_x_at11/111+26446568..26453013Potassium channel AKT6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8626.1.S1_a_at--786--3214Chr11:3240102..3240126 (25 bp)
CAAGGATGATGCGAAGGTGCAGCCT
LOC_Os11g06660
Os.8626.1.S1_a_at--613--6293Chr10:17631538..17631562 (25 bp)
GATGATGCGAAGGTGCAGCCTTCGT
LOC_Os10g33840
Os.8626.1.S1_a_at--723--2994Chr11:3239868..3239892 (25 bp)
AATGAAGATCTGCAATGACGACGTC
NONE
Os.8626.1.S1_a_at--316--5354Chr11:3239865..3239889 (25 bp)
GAAGATCTGCAATGACGACGTCTCC
NONE
Os.8626.1.S1_a_at--534--6414Chr11:3239862..3239886 (25 bp)
GATCTGCAATGACGACGTCTCCGAT
NONE
Os.8626.1.S1_a_at--1103--9474Chr11:3239860..3239884 (25 bp)
TCTGCAATGACGACGTCTCCGATGA
NONE
Os.8626.1.S1_a_at--319--3014Chr11:3239855..3239879 (25 bp)
AATGACGACGTCTCCGATGAAGCAA
NONE
Os.8626.1.S1_a_at--397--694Chr11:3239854..3239878 (25 bp)
ATGACGACGTCTCCGATGAAGCAAC
NONE
Os.8626.1.S1_a_at--972--1854Chr11:3239851..3239875 (25 bp)
ACGACGTCTCCGATGAAGCAACCGA
NONE
Os.8626.1.S1_a_at--1098--5754Chr11:3239849..3239873 (25 bp)
GACGTCTCCGATGAAGCAACCGAGA
NONE
Os.8626.1.S1_a_at--457--7154Chr11:3239847..3239870 (24 bp)
GTCTCCGATGAAGCAACCGAGAAGG
NONE
Target Sequence 
CAAGGATGATGCGAAGGTGCAGCCTTCGTCAGGGCAAACACCAAACAAGGGGAATTATTACATGGGCCACGCGAATGCCA
TCATGATGATGTTTCAGTACATACGTGATGGCTGCCGGCATGTTGAGAGTTCCATGGAAGACTTCAAGTCCAAGAAGGTA
GAAGAAGGACGCGATGAGAAAAGGAAGGTGGGAGAAGGGTATGATCCTCGCTGGTCTTCTCCCATCGAGATAACAATGAA
GATCTGCAATGACGACGTCTCCGATGAAGCAACCGAGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8626.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis