Browse Element(s) Details


Os.8626.2.S1_at

Description gb:AK061246.1
DB_XREF= gi:32971264
TID=Os.8626.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0038D11.19 (P0038D11.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-D12, full insert sequence.
FL= gb:AK061246.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4597011/11expressed protein
LOC_Os05g266702/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45920OsAffx.11483.1.S1_at11/111+26416385..26416963hypothetical protein
LOC_Os01g45930NANA1+26419742..26420167hypothetical protein
LOC_Os01g45940OsAffx.2245.1.S1_at10/111+26422086..26422434hypothetical protein
LOC_Os01g45960Os.21836.1.S1_at11/111+26433684..26438061hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g45970Os.8626.1.S1_a_at11/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.2.S1_at11/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.3.S1_s_at7/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.1.S1_x_at6/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.3.S1_x_at4/111+26438803..26440973expressed protein
LOC_Os01g45990Os.50245.1.S1_x_at11/111+26446568..26453013Potassium channel AKT6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8626.2.S1_at--355--211Chr01:26439331..26439635 (25 bp)
ATTTGGTATAGTAAGGCATGGCATC
LOC_Os01g45970
Os.8626.2.S1_at--310--3191Chr01:26439155..26439179 (25 bp)
CAATACATACGTGATGGTTGCCGAC
LOC_Os01g45970
Os.8626.2.S1_at--238--3571Chr01:26439150..26439174 (25 bp)
CATACGTGATGGTTGCCGACGTGTT
LOC_Os01g45970
Os.8626.2.S1_at--278--8571Chr01:26439141..26439165 (25 bp)
TGGTTGCCGACGTGTTGAGAGTTCC
LOC_Os01g45970
Os.8626.2.S1_at--1020--6871Chr01:26438956..26438980 (25 bp)
GTATTATCACTACTGTGTTTTGGCT
LOC_Os01g45970
Os.8626.2.S1_at--1159--372Chr08:24528498..24528521 (24 bp)
ATCACTACTGTGTTTTGGCTTTAGA
NONE
Os.8626.2.S1_at--67--7051Chr01:26438887..26438911 (25 bp)
GTAAACAATGTCGTTCGGGCCTATT
LOC_Os01g45970
Os.8626.2.S1_at--137--2411Chr01:26438885..26438909 (25 bp)
AAACAATGTCGTTCGGGCCTATTCA
LOC_Os01g45970
Os.8626.2.S1_at--327--8711Chr01:26438879..26438903 (25 bp)
TGTCGTTCGGGCCTATTCAGTATTG
LOC_Os01g45970
Os.8626.2.S1_at--266--7374Chr11:3239704..3239728 (25 bp)
GTGAAATGCACAACCAAATTCGATG
NONE
Os.8626.2.S1_at--301--5134Chr11:3239697..3239721 (25 bp)
GCACAACCAAATTCGATGAAACTTT
NONE
Target Sequence 
ATTTGGTATAGTAAGGCATGGCATCCATGGATGATGTGGATTTTTCACCACATCAAGCCACACCTAAGGAGTCAATGAAC
TCCAAGGATGATGCGAAGGTGCAGCCTTCGTCAGGGCAAACACCAAACAAGGGGAATTATTACATGGGCCACGCGAATGC
CATCATGATGATGTTTCAATACATACGTGATGGTTGCCGACGTGTTGAGAGTTCCATGGAAGACTACACGTGCAAGAAGG
TAGAAAAAGGATACGGTGAAAAAAGGAAGGTGGGAGAAGGGTATGATCCTCGCTGGTCTTCTCCCATCGAGATAACAATG
AAGATCTGCAATGACGACGTCTCCGATGAAGCAACCGAGAAGGAACCATGATTTAGTATTATCACTACTGTGTTTTGGCT
TTAGAATAAAATAACATTTCTTGTGAATTACACAAGAAAATTCAGTAAACAATGTCGTTCGGGCCTATTCAGTATTGCTT
GTGAAATGCACAACCAAATTCGATGAAACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8626.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis