Browse Element(s) Details


Os.8647.1.S1_at

Description gb:AK120851.1
DB_XREF= gi:37990474
TID=Os.8647.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023023M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023023M23, full insert sequence.
FL= gb:AK120851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3216011/11Copine family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32100NANA2+18961663..18964570retrotransposon protein, putative, unclassified
LOC_Os02g32110Os.8923.1.A1_s_at11/112+18966946..18970500exostosin family protein, putative, expressed
LOC_Os02g32110Os.8923.1.A1_at11/112+18966946..18970500exostosin family protein, putative, expressed
LOC_Os02g32120Os.6327.1.S1_at11/112+18974997..18978323Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor, putative, expressed
LOC_Os02g32130NANA2+18979121..18979324hypothetical protein
LOC_Os02g32140OsAffx.2825.1.S1_x_at1/112+18981231..18982637AP2 domain containing protein, expressed
LOC_Os02g32150OsAffx.12315.1.S1_at11/112+18985087..18985701hypothetical protein
LOC_Os02g32160Os.8647.1.S1_at11/112+18988145..18995211Copine family protein, expressed
LOC_Os02g32170OsAffx.30613.3.S1_x_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32170OsAffx.30613.3.S1_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32170OsAffx.30613.1.S1_x_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32180OsAffx.12316.1.S1_at10/112+19002248..19006431hypothetical protein
LOC_Os02g32190OsAffx.24531.1.S1_at11/112+19010914..19014434hypothetical protein
LOC_Os02g32200Os.18269.1.S2_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32200Os.18269.1.S1_at11/112+19015774..19018851thioesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0009266biological_processresponse to temperature stimulus
GO:0009270biological_processresponse to humidity
GO:0009626biological_processhypersensitive response
GO:0010186biological_processpositive regulation of cellular defense response
GO:0019725biological_processcell homeostasis
GO:0045793biological_processpositive regulation of cell size
GO:0005886cellular_componentplasma membrane
GO:0005544molecular_functioncalcium-dependent phospholipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8647.1.S1_at--270--6631Chr02:18988668..18988692 (25 bp)
GTTGGGCCACATCATCATGCAAATT
LOC_Os02g32160
Os.8647.1.S1_at--296--3211Chr02:18988554..18988578 (25 bp)
CAAGGTCTAATATCAGTGGCGCATT
LOC_Os02g32160
Os.8647.1.S1_at--1141--7011Chr02:18988525..18988549 (25 bp)
GTACTTGTCTTGTTGCTACTCATGT
LOC_Os02g32160
Os.8647.1.S1_at--123--6951Chr02:18988380..18988404 (25 bp)
GTAGTTTCGAACTTGCTGCTCAAAT
LOC_Os02g32160
Os.8647.1.S1_at--102--3911Chr02:18988322..18988346 (25 bp)
CTGGTTATGGTGCTGAGTTTCCTCA
LOC_Os02g32160
Os.8647.1.S1_at--974--6831Chr02:18988306..18988330 (25 bp)
GTTTCCTCAGATTAGCGGTTTCTAT
LOC_Os02g32160
Os.8647.1.S1_at--808--3691Chr02:18988285..18988309 (25 bp)
CTATCTGGGATTCGTCTTCTTCATA
LOC_Os02g32160
Os.8647.1.S1_at--332--7151Chr02:18988272..18988296 (25 bp)
GTCTTCTTCATACCTGCGTGTAAGA
LOC_Os02g32160
Os.8647.1.S1_at--773--10251Chr02:18988227..18988251 (25 bp)
TTTGAACCCCATGTTGACTCTTTGT
LOC_Os02g32160
Os.8647.1.S1_at--115--5711Chr02:18988212..18988236 (25 bp)
GACTCTTTGTGCGTACCTGGTAAAA
LOC_Os02g32160
Os.8647.1.S1_at--129--8731Chr02:18988179..18988203 (25 bp)
TGTCAGTAACTCTACCATGTTCTGG
LOC_Os02g32160
Target Sequence 
GTTGGGCCACATCATCATGCAAATTTTAAAGCCATTGATGTGTGAAAAGGTGGAAAGATGGATAGTCTGGACATGTTACA
AGTAAGAAATATGGATCTGCTGGAAATTTGTAGCCAAGGTCTAATATCAGTGGCGCATTGTCNCGTACTTGTCTTGTTGC
TACTCATGTNGACAATGTGGTGCAGGGCAATTGAATTGAGGCATGAATTGCTTGGCACTGCAGATTGGAAACTGTTGTCT
CTGAAGAAACATTTGAATTGTGTATGATTCGTGTAAAGGTCAAAGGTTCGTAGTTTCGAACTTGCTGCTCAAATCAAGCG
AGTGGTAGTTTTNTTTTTCTTCTATATTCTGGTTATGGTGCTGAGTTTCCTCAGATTAGCGGTTTCTATCTGGGATTCGT
CTTCTTCATACCTGCGTGTAAGATCATGTCTTGAAATTAAGGGTTTGAACCCCATGTTGACTCTTTGTGCGTACCTGGTA
AAAAANCATTTNTTGTCAGTAACTCTACCATGTTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis