Browse Element(s) Details


OsAffx.12316.1.S1_at

Description tigr:9630.m03045
TID=OsAffx.12316.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3218010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32120Os.6327.1.S1_at11/112+18974997..18978323Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor, putative, expressed
LOC_Os02g32130NANA2+18979121..18979324hypothetical protein
LOC_Os02g32140OsAffx.2825.1.S1_x_at1/112+18981231..18982637AP2 domain containing protein, expressed
LOC_Os02g32150OsAffx.12315.1.S1_at11/112+18985087..18985701hypothetical protein
LOC_Os02g32160Os.8647.1.S1_at11/112+18988145..18995211Copine family protein, expressed
LOC_Os02g32170OsAffx.30613.3.S1_x_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32170OsAffx.30613.3.S1_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32170OsAffx.30613.1.S1_x_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32180OsAffx.12316.1.S1_at10/112+19002248..19006431hypothetical protein
LOC_Os02g32190OsAffx.24531.1.S1_at11/112+19010914..19014434hypothetical protein
LOC_Os02g32200Os.18269.1.S2_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32200Os.18269.1.S1_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32210Os.55268.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210OsAffx.24532.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57515.1.A1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57189.1.S1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32220Os.54381.1.S1_at2/112+19028471..19029896retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g32230Os.33351.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32230Os.54015.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12316.1.S1_at--1056--8791Chr02:19004349..19004373 (25 bp)
TGTTCCCCTGCTATATTGGTGTTTA
LOC_Os02g32180
OsAffx.12316.1.S1_at--627--7731Chr02:19004366..19004390 (25 bp)
GGTGTTTACAAGTTCCACGCATTCC
LOC_Os02g32180
OsAffx.12316.1.S1_at--942--91NONE
ATTCCCTGTTTCCTTGGAGCAAGTC
NONE
OsAffx.12316.1.S1_at--1105--5271Chr02:19005324..19005348 (25 bp)
GAATGGGCAACTGCATTTTCCTGGG
LOC_Os02g32180
OsAffx.12316.1.S1_at--52--8191Chr02:19005722..19005746 (25 bp)
GGAAGAATCCAGCATCAACATACAG
LOC_Os02g32180
OsAffx.12316.1.S1_at--245--2091Chr02:19005969..19005988 (20 bp)
ACATACAGATCATTAGCAGCTACCT
LOC_Os02g32180
OsAffx.12316.1.S1_at--162--3711Chr02:19005983..19006007 (25 bp)
CTACCTGGATTTGCTCGCACAAGGA
LOC_Os02g32180
OsAffx.12316.1.S1_at--314--171Chr02:19006171..19006191 (21 bp)
ATTTTGGTGTGCTACCAATCTCCTT
LOC_Os02g32180
OsAffx.12316.1.S1_at--955--1371Chr02:19006209..19006233 (25 bp)
AGACCATGTTCCAATGAGGGCCTTG
LOC_Os02g32180
OsAffx.12316.1.S1_at--320--10071Chr02:19006245..19006269 (25 bp)
TAGGGTGCCCCTCCAAGTGGAAAAT
LOC_Os02g32180
OsAffx.12316.1.S1_at--930--6211Chr02:19006306..19006330 (25 bp)
GATGGCGTCGACGTTCCTCGTGTCA
LOC_Os02g32180
Target Sequence 
TGTTCCCCTGCTATATTGGTGTTTACAAGTTCCACGCATTCCCTGTTTCCTTGGAGCAAGTCCTTGACAGGGAGGACACA
GATGAGGAACAACGCCTCCTTGCTGCCCTTGAAATTGAAGTTAAACCAATGGCTATGCAAATTGATTATCCTGAATGGGC
AACTGCATTTTCCTGGGGCCACGAAGTATTTAAGAAGCTGATAGAGAACATAATTGGATGGAAGAATCCAGCATCAACAT
ACAGATCATTAGCAGCTACCTGGATTTGCTCGCACAAGGACGAGTATGAACAGTATGTAGATGATCTTGGAGATGATTAC
CCCCTGGAATTTTGGTGTGCTACCAATCTCCTTCCACCTCGTCTGTACACAGACCATGTTCCAATGAGGGCCTTGGCAGC
CGCGTTTAGGGTGCCCCTCCAAGTGGAAAATCTGCATAATGGACCAGCTCAAGATATCTACACCGCGGATGGCGTCGACG
TTCCTCGTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis