Browse Element(s) Details


Os.57515.1.A1_at

Description gb:D85878.1
DB_XREF= gi:1621496
TID=Os.57515.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57515 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) retrotransposon Tos19 mRNA for reverse transcriptase, partial cds
DEF=Oryza sativa (japonica cultivar-group) retrotransposon Tos19 mRNA for reverse transcriptase, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g322101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32170OsAffx.30613.3.S1_x_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32170OsAffx.30613.3.S1_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32170OsAffx.30613.1.S1_x_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32180OsAffx.12316.1.S1_at10/112+19002248..19006431hypothetical protein
LOC_Os02g32190OsAffx.24531.1.S1_at11/112+19010914..19014434hypothetical protein
LOC_Os02g32200Os.18269.1.S2_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32200Os.18269.1.S1_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32210Os.55268.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210OsAffx.24532.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57515.1.A1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57189.1.S1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32220Os.54381.1.S1_at2/112+19028471..19029896retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g32230Os.33351.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32230Os.54015.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32240NANA2+19035360..19035665hypothetical protein
LOC_Os02g32250Os.46107.1.S2_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_x_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S1_s_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_a_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32270OsAffx.2826.1.S1_at11/112+19048045..19048578hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57515.1.A1_at--1083--2091NONE
ACATGATTGATTAAAGCCGGATCAT
NONE
Os.57515.1.A1_at--244--2672Chr09:12916738..12916762 (25 bp)
AAGCCGGATCATGATCACTTGGAGA
NONE
Os.57515.1.A1_at--359--6452Chr09:12916750..12916774 (25 bp)
GATCACTTGGAGAGAATCCAGCAGC
NONE
Os.57515.1.A1_at--434--5132Chr09:12916773..12916797 (25 bp)
GCACAAACAACGGAGCTAAAACGCT
NONE
Os.57515.1.A1_at--635--2372Chr09:12916791..12916815 (25 bp)
AAACGCTCAAACCAAGCACGAGGTG
NONE
Os.57515.1.A1_at--134--5093Chr09:12916806..12916830 (25 bp)
GCACGAGGTGCTTGCTTTAAACCAT
NONE
Os.57515.1.A1_at--351--6152Chr09:12916810..12916834 (25 bp)
GAGGTGCTTGCTTTAAACCATAAAG
NONE
Os.57515.1.A1_at--403--9832Chr09:12916823..12916847 (25 bp)
TAAACCATAAAGAGCACGATTGAGA
NONE
Os.57515.1.A1_at--946--5872Chr09:12916834..12916858 (25 bp)
GAGCACGATTGAGACGAAAAACATA
NONE
Os.57515.1.A1_at--991--10272Chr09:12916860..12916884 (25 bp)
TTTGCAGGGGCATCAACACCAGGAG
NONE
Os.57515.1.A1_at--216--3372Chr09:12916876..12916900 (25 bp)
CACCAGGAGGCGGTTTCATGTAAAC
NONE
Target Sequence 
ACATGATTGATTAAAGCCGGATCATGATCACTTGGAGAGAATCCAGCAGCACAAACAACGGAGCTAAAACGCTCAAACCA
AGCACGAGGTGCTTGCTTTAAACCATAAAGAGCACGATTGAGACGAAAAACATAATTTGCAGGGGCATCAACACCAGGAG
GCGGTTTCATGTAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57515.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis