Browse Element(s) Details


Os.55268.1.S1_at

Description gb:AK107767.1
DB_XREF= gi:32992976
TID=Os.55268.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-B03, full insert sequence.
FL= gb:AK107767.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3221010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32170OsAffx.30613.3.S1_x_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32170OsAffx.30613.3.S1_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32170OsAffx.30613.1.S1_x_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32180OsAffx.12316.1.S1_at10/112+19002248..19006431hypothetical protein
LOC_Os02g32190OsAffx.24531.1.S1_at11/112+19010914..19014434hypothetical protein
LOC_Os02g32200Os.18269.1.S2_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32200Os.18269.1.S1_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32210Os.55268.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210OsAffx.24532.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57515.1.A1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57189.1.S1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32220Os.54381.1.S1_at2/112+19028471..19029896retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g32230Os.33351.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32230Os.54015.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32240NANA2+19035360..19035665hypothetical protein
LOC_Os02g32250Os.46107.1.S2_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_x_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S1_s_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_a_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32270OsAffx.2826.1.S1_at11/112+19048045..19048578hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55268.1.S1_at--367--8371Chr02:19020628..19020652 (25 bp)
GGCGTCCAGCCTCACGAATCATGTC
NONE
Os.55268.1.S1_at--24--8432Chr10:5358345..5358426 (25 bp)
GGCCGGCGATTCACGGCGAGCTTCA
NONE
Os.55268.1.S1_at--869--5912Chr02:19020879..19020903 (25 bp)
GAGCTTCACCTACGCACAGGCGGAG
LOC_Os02g32210
Os.55268.1.S1_at--453--1851Chr02:19020890..19020914 (25 bp)
ACGCACAGGCGGAGATTCACAGAGA
LOC_Os02g32210
Os.55268.1.S1_at--1045--3412Chr10:5358449..5358473 (25 bp)
CAGAGAGTGAGAGGTATTGCTCCAT
NONE
Os.55268.1.S1_at--170--9111Chr02:19020926..19020950 (25 bp)
TGCTCCATCTCCAAGACTCCAATTG
LOC_Os02g32210
Os.55268.1.S1_at--247--471Chr02:19020932..19020956 (25 bp)
ATCTCCAAGACTCCAATTGTGCCTT
LOC_Os02g32210
Os.55268.1.S1_at--59--5731Chr02:19020940..19020964 (25 bp)
GACTCCAATTGTGCCTTGTGATTTT
LOC_Os02g32210
Os.55268.1.S1_at--378--4391Chr02:19020944..19020968 (25 bp)
CCAATTGTGCCTTGTGATTTTGTGA
LOC_Os02g32210
Os.55268.1.S1_at--657--8833Chr10:5358408..5358514 (25 bp)
TGATTTTGTGAATGAAACTGTGCCC
NONE
Os.55268.1.S1_at--387--2571Chr02:19020973..19020997 (25 bp)
AACTGTGCCCATGATATTTTTGTGT
LOC_Os02g32210
Target Sequence 
GGCGTCCAGCCTCACGAATCATGTCCCCTCCACGACTCCAGCTCACCCTCCGGAGTCAGCAAGGGGCGGCGGCGGCGGGG
AGGCGAGACAGGCAAGGGCGCGACGATGGGACAGGCGCGGACGGCGAGGTTGTGGCGGCCGGCGAGACAGGCAAGGGCAC
GGCGAGGGGACAGGTGTGGCCGGCGAGGTTGCAGCGCACATGCGCGGTCGCGGCGAGGGGACAGGCACGGCGGCGGCCGG
CGATTCACGGCGAGCTTCACCTACGCACAGGCGGAGATTCACAGAGAGTGAGAGGTATTGCTCCATCTCCAAGACTCCAA
TTGTGCCTTGTGATTTTGTGAATGAAACTGTGCCCATGATATTTTTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis