Browse Element(s) Details


Os.8655.1.S1_at

Description gb:AK062831.1
DB_XREF= gi:32972849
TID=Os.8655.1
CNT=119
FEA=FLmRNA
TIER=FL+Stack
STK=39
UG=Os.8655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for thionin Osthi1, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-G07, full insert sequence.
FL= gb:AK062831.1 gb:AB072337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3193011/11Thionin precursor, putative, expressed
LOC_Os06g3224011/11Plant thionin family protein, expressed
LOC_Os06g3202011/11Plant thionin family protein, expressed
LOC_Os06g3196011/11Plant thionin family protein, expressed
LOC_Os06g3189011/11Plant thionin family protein, expressed
LOC_Os06g321608/11Plant thionin family protein, expressed
LOC_Os06g318006/11Plant thionin family protein, expressed
LOC_Os06g322004/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g31900OsAffx.15693.1.S1_at4/116+18530650..18533003retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31900Os.26810.1.A1_s_at1/116+18530650..18533003retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31910NANA6+18536016..18540643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31920Os.52303.1.S1_at6/116+18548049..18552657retrotransposon protein, putative, unclassified
LOC_Os06g31920Os.52303.1.S1_x_at5/116+18548049..18552657retrotransposon protein, putative, unclassified
LOC_Os06g31920OsAffx.2719.1.S1_at2/116+18548049..18552657retrotransposon protein, putative, unclassified
LOC_Os06g31920OsAffx.12157.1.S1_at1/116+18548049..18552657retrotransposon protein, putative, unclassified
LOC_Os06g31930Os.8655.1.S1_at11/116+18556928..18558036Thionin precursor, putative, expressed
LOC_Os06g31940NANA6+18563509..18564178TNP2, putative
LOC_Os06g31950Os.52303.1.S1_x_at5/116+18568501..18573121retrotransposon protein, putative, unclassified
LOC_Os06g31950Os.52303.1.S1_at5/116+18568501..18573121retrotransposon protein, putative, unclassified
LOC_Os06g31950OsAffx.2719.1.S1_at2/116+18568501..18573121retrotransposon protein, putative, unclassified
LOC_Os06g31950OsAffx.12157.1.S1_at1/116+18568501..18573121retrotransposon protein, putative, unclassified
LOC_Os06g31960Os.8655.1.S1_at11/116+18577407..18578496Plant thionin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0042829biological_processdefense response to pathogen
GO:0050827molecular_functiontoxin receptor binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8655.1.S1_at--507--4837Chr06:18773173..18773197 (25 bp)
GCTAAACTTTCTGGCTGCAAAATTG
LOC_Os06g32240
Os.8655.1.S1_at--1134--6255Chr06:18773146..18773170 (25 bp)
GATGGGAACTGCAAGCCTCCTTACG
LOC_Os06g32240
Os.8655.1.S1_at--979--8155Chr06:18773142..18773166 (25 bp)
GGAACTGCAAGCCTCCTTACGTTCA
LOC_Os06g32240
Os.8655.1.S1_at--950--9016Chr06:18773137..18773161 (25 bp)
TGCAAGCCTCCTTACGTTCACCATA
LOC_Os06g32240
Os.8655.1.S1_at--1099--4176Chr06:18524241..18524446 (25 bp)
CCCAGAAGCTGAGGAATCGGAGGTA
LOC_Os06g31890
Os.8655.1.S1_at--957--5237Chr06:18772911..18772935 (25 bp)
GAATCGGAGGTAGTTGACTTCTGCA
LOC_Os06g32240
Os.8655.1.S1_at--117--9457Chr06:18772908..18772932 (25 bp)
TCGGAGGTAGTTGACTTCTGCAAGC
LOC_Os06g32240
Os.8655.1.S1_at--22--9179Chr06:18523998..18524022 (25 bp)
TGCCGCCGCTTCTGTACCAAGGAAG
LOC_Os06g31890
Os.8655.1.S1_at--138--3658Chr06:18772631..18772655 (25 bp)
CTTCTGTACCAAGGAAGCTGAGACT
LOC_Os06g32240
Os.8655.1.S1_at--282--10798Chr06:18772599..18772623 (25 bp)
TTGTTTCCTAAGCAAGTGCAACATG
LOC_Os06g32240
Os.8655.1.S1_at--1146--5178Chr06:18772588..18772612 (25 bp)
GCAAGTGCAACATGCAAGCATAAGG
LOC_Os06g32240
Target Sequence 
GCTAAACTTTCTGGCTGCAAAATTGTTGATGGGAACTGCAAGCCTCCTTACGTTCACCATACCCTTCACCCAGAAGCTGA
GGAATCGGAGGTAGTTGACTTCTGCAAGCTGGGATGTGCTTCGTCTGTGTGCAGCACCATGAGCACTCTTTTTGNCAATG
AANGAAGCCAATCATGCCGTCGATCGTTGCAACGAAGCATGCCGCCGCTTCTGTACCAAGGAAGCTGAGACTGTCACCGN
TTGTTTCCTAAGCAAGTGCAACATGCAAGCATAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis