Browse Element(s) Details


OsAffx.15693.1.S1_at

Description tigr:9634.m03020
TID=OsAffx.15693.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3230011/11hypothetical protein
LOC_Os06g319004/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g322104/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g318104/11hypothetical protein
LOC_Os06g321704/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g229301/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g32250NANA6+18778321..18778716retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32260NANA6+18781913..18785245transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32270Os.46053.2.S1_x_at10/116+18786482..18789700transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32280Os.14491.2.S1_x_at5/116+18791768..18795468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32280Os.47463.1.S1_x_at5/116+18791768..18795468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32290OsAffx.15692.1.S1_x_at11/116+18795911..18796986hypothetical protein
LOC_Os06g32290OsAffx.15692.1.S1_at11/116+18795911..18796986hypothetical protein
LOC_Os06g32300OsAffx.15693.1.S1_at11/116+18799085..18799896hypothetical protein
LOC_Os06g32300Os.26810.1.A1_s_at1/116+18799085..18799896hypothetical protein
LOC_Os06g32310OsAffx.26087.1.S1_x_at11/116+18805665..18806481hypothetical protein
LOC_Os06g32310OsAffx.26087.1.S1_at11/116+18805665..18806481hypothetical protein
LOC_Os06g32320OsAffx.15694.1.S1_at10/116+18809317..18811262hypothetical protein
LOC_Os06g32330OsAffx.15695.1.S1_x_at4/116+18816252..18816728hypothetical protein
LOC_Os06g32330OsAffx.4378.1.S1_at2/116+18816252..18816728hypothetical protein
LOC_Os06g32330OsAffx.4378.1.S1_x_at1/116+18816252..18816728hypothetical protein
LOC_Os06g32340NANA6+18821333..18826727transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15693.1.S1_at--188--8531Chr06:18799257..18799281 (25 bp)
TGGACATTACTGTACCGGGAAAGCA
LOC_Os06g32300
OsAffx.15693.1.S1_at--781--3851Chr06:18799248..18799272 (25 bp)
CTGTACCGGGAAAGCAACACATCTT
LOC_Os06g32300
OsAffx.15693.1.S1_at--248--5151Chr06:18799235..18799259 (25 bp)
GCAACACATCTTTGGCATTGATAAC
LOC_Os06g32300
OsAffx.15693.1.S1_at--1070--8271Chr06:18799222..18799246 (25 bp)
GGCATTGATAACACTAAAGACGCGT
LOC_Os06g32300
OsAffx.15693.1.S1_at--421--2331Chr06:18799207..18799231 (25 bp)
AAAGACGCGTCAGTTTACAACCAAT
LOC_Os06g32300
OsAffx.15693.1.S1_at--371--4097Chr06:18799181..18799205 (25 bp)
CGACGACGTCCCATTATTCACAGAT
LOC_Os06g32300
OsAffx.15693.1.S1_at--216--7251Chr06:18799174..18799198 (25 bp)
GTCCCATTATTCACAGATCTACCTA
LOC_Os06g32300
OsAffx.15693.1.S1_at--394--3717Chr06:18799156..18799180 (25 bp)
CTACCTAACCAGATCAAGCGAATTG
LOC_Os06g32300
OsAffx.15693.1.S1_at--313--2657Chr06:18799141..18799165 (25 bp)
AAGCGAATTGAGACAACCCTTGACG
LOC_Os06g32300
OsAffx.15693.1.S1_at--1019--5978Chr11:14624744..14624768 (25 bp)
GAGACAACCCTTGACGAAGAGAAGT
NONE
OsAffx.15693.1.S1_at--987--1331Chr06:18799115..18799139 (25 bp)
AGAGAAGTTTTCGTCCGTGTGGAAG
LOC_Os06g32300
Target Sequence 
TGGACATTACTGTACCGGGAAAGCAACACATCTTTGGCATTGATAACACTAAAGACGCGTCAGTTTACAACCAATACGAC
GACGTCCCATTATTCACAGATCTACCTAACCAGATCAAGCGAATTGAGACAACCCTTGACGAAGAGAAGTTTTCGTCCGT
GTGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis