Browse Element(s) Details


OsAffx.26087.1.S1_x_at

Description tigr:9634.m03021
TID=OsAffx.26087.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3231011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g32260NANA6+18781913..18785245transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32270Os.46053.2.S1_x_at10/116+18786482..18789700transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32280Os.14491.2.S1_x_at5/116+18791768..18795468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32280Os.47463.1.S1_x_at5/116+18791768..18795468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32290OsAffx.15692.1.S1_x_at11/116+18795911..18796986hypothetical protein
LOC_Os06g32290OsAffx.15692.1.S1_at11/116+18795911..18796986hypothetical protein
LOC_Os06g32300OsAffx.15693.1.S1_at11/116+18799085..18799896hypothetical protein
LOC_Os06g32300Os.26810.1.A1_s_at1/116+18799085..18799896hypothetical protein
LOC_Os06g32310OsAffx.26087.1.S1_x_at11/116+18805665..18806481hypothetical protein
LOC_Os06g32310OsAffx.26087.1.S1_at11/116+18805665..18806481hypothetical protein
LOC_Os06g32320OsAffx.15694.1.S1_at10/116+18809317..18811262hypothetical protein
LOC_Os06g32330OsAffx.15695.1.S1_x_at4/116+18816252..18816728hypothetical protein
LOC_Os06g32330OsAffx.4378.1.S1_at2/116+18816252..18816728hypothetical protein
LOC_Os06g32330OsAffx.4378.1.S1_x_at1/116+18816252..18816728hypothetical protein
LOC_Os06g32340NANA6+18821333..18826727transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32350OsAffx.4981.1.S1_at11/116+18827824..18828457Plant thionin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26087.1.S1_x_at--532--2792Chr04:12298158..12298182 (25 bp)
AAGATGAGCCTGATAGTCGCCGCCG
NONE
OsAffx.26087.1.S1_x_at--69--8932Chr04:12298162..12298186 (25 bp)
TGAGCCTGATAGTCGCCGCCGTGAG
NONE
OsAffx.26087.1.S1_x_at--705--4491Chr06:18806402..18806426 (25 bp)
GCCGTGAGCGTGAGAGGGCCGCGAC
LOC_Os06g32310
OsAffx.26087.1.S1_x_at--752--8612Chr06:18806375..18806399 (25 bp)
TGGTGACTACAACGCCCGTAGCTGG
LOC_Os06g32310
OsAffx.26087.1.S1_x_at--459--2612Chr06:18806365..18806389 (25 bp)
AACGCCCGTAGCTGGAGCTCCTCGT
LOC_Os06g32310
OsAffx.26087.1.S1_x_at--1116--9393Chr04:12298231..12298255 (25 bp)
TCGTCATCTTCGTCGGTTCATCCGC
NONE
OsAffx.26087.1.S1_x_at--471--4151Chr06:18806314..18806338 (25 bp)
CGCGTCATTGCTGCAGTGCTGGAAG
LOC_Os06g32310
OsAffx.26087.1.S1_x_at--714--3912Chr04:12298277..12298312 (25 bp)
CTGGAAGAGGTCGATCGGCGGGCGA
NONE
OsAffx.26087.1.S1_x_at--801--3372Chr04:12298335..12298359 (25 bp)
CACCATGAGGGCGTCGGACAGTCTG
NONE
OsAffx.26087.1.S1_x_at--743--8412Chr08:851335..851359 (25 bp)
GGCCGCCGAGCACGGTGTCGATTGG
NONE
OsAffx.26087.1.S1_x_at--293--7912Chr08:851318..851342 (25 bp)
TCGATTGGCCGGAGGTACCTCGACG
NONE
Target Sequence 
AAGATGAGCCTGATAGTCGCCGCCGTGAGCGTGAGAGGGCCGCGACGCTGGTGACTACAACGCCCGTAGCTGGAGCTCCT
CGTCATCTTCGTCGGTTCATCCGCCTCCTCGCGTCATTGCTGCAGTGCTGGAAGAGGTCGATCGGCGGGCGAGGTGCGGC
ATTCGGCTGCCGCACCATGAGGGCGTCGGACAGTCTGGCGACAGCCGCGCGCGCTGTCAAATTGGCTTGCGGCCGTGGCC
GTGACGAGGCGGCCGCGCGGGCTAGACGGCGCCGTGGAGTACGGGCTCACCGCCGTGGCCGCCGAGCACGGTGTCGATTG
GCCGGAGGTACCTCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26087.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis