Browse Element(s) Details


OsAffx.4378.1.S1_at

Description tigr:9633.m01747
TID=OsAffx.4378.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1930011/11hypothetical protein
LOC_Os06g323302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19270OsAffx.14759.1.S1_s_at11/115+11168717..11177270DNA mismatch repair protein MSH2, putative, expressed
LOC_Os05g19280Os.6060.1.S1_at11/115+11179693..11185627expressed protein
LOC_Os05g19290NANA5+11190301..11190540hypothetical protein
LOC_Os05g19300OsAffx.4378.1.S1_at11/115+11198961..11199368hypothetical protein
LOC_Os05g19300OsAffx.4378.1.S1_x_at11/115+11198961..11199368hypothetical protein
LOC_Os05g19310Os.27691.1.S1_x_at6/115+11201165..11204748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19310Os.27691.2.S1_x_at2/115+11201165..11204748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19320NANA5+11205052..11205642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330OsAffx.447.1.S1_at5/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330OsAffx.22947.2.S1_x_at1/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330Os.52609.1.S1_at1/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330OsAffx.22947.1.S1_x_at1/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19340NANA5+11213314..11214063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19350NANA5+11216239..11218409retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4378.1.S1_at--188--971Chr05:11199000..11199024 (25 bp)
AGGAGTTGGCCAGCGACGACTTTCT
LOC_Os05g19300
OsAffx.4378.1.S1_at--365--6051Chr05:11199002..11199026 (25 bp)
GAGTTGGCCAGCGACGACTTTCTGG
LOC_Os05g19300
OsAffx.4378.1.S1_at--412--3391Chr05:11199010..11199034 (25 bp)
CAGCGACGACTTTCTGGCGATTTTC
LOC_Os05g19300
OsAffx.4378.1.S1_at--250--4611Chr05:11199012..11199036 (25 bp)
GCGACGACTTTCTGGCGATTTTCGG
LOC_Os05g19300
OsAffx.4378.1.S1_at--798--4071Chr05:11199016..11199040 (25 bp)
CGACTTTCTGGCGATTTTCGGCGGA
LOC_Os05g19300
OsAffx.4378.1.S1_at--1095--3671Chr05:11199019..11199043 (25 bp)
CTTTCTGGCGATTTTCGGCGGATGA
LOC_Os05g19300
OsAffx.4378.1.S1_at--647--10611Chr05:11199021..11199045 (25 bp)
TTCTGGCGATTTTCGGCGGATGACA
LOC_Os05g19300
OsAffx.4378.1.S1_at--123--4051Chr05:11199027..11199051 (25 bp)
CGATTTTCGGCGGATGACAGATGGC
LOC_Os05g19300
OsAffx.4378.1.S1_at--306--8954Chr08:10525496..10525520 (25 bp)
TGACAGATGGCGGACGGGCTTCTCC
NONE
OsAffx.4378.1.S1_at--705--5654Chr08:10525497..10525521 (25 bp)
GACAGATGGCGGACGGGCTTCTCCT
NONE
OsAffx.4378.1.S1_at--360--4251Chr05:11199217..11199241 (25 bp)
CCGGGATAGAGCTGTACTTTGCGGA
LOC_Os05g19300
Target Sequence 
AGGAGTTGGCCAGCGACGACTTTCTGGCGATTTTCGGCGGATGACAGATGGCGGACGGGCTTCTCCTCGCAGCTGCGAAT
CCAATGGAGACGACGGCGACCGAAGGCGACGACGGACGACGACGAACGGCGCGGCTGGAGGCACGGCGGCGACGGCGGCG
CTCCGGTTCACGATGACGGCCAATCTCCGGTTGGATTTGGCGCAAAAGAACCAGCGGCCGGGATAGAGCTGTACTTTGCG
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis