Browse Element(s) Details


Os.8689.1.S1_at

Description gb:AA752075
DB_XREF= gi:2798781
DB_XREF=96AS1022
CLONE=96AS1022
TID=Os.8689.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0710A02.20 (P0710A02.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4099011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40950Os.57295.1.S1_at8/111+23494454..23495173hypothetical protein
LOC_Os01g40960OsAffx.23615.2.S1_s_at11/111+23498111..23498734MtN3/saliva family protein
LOC_Os01g40970OsAffx.11415.1.S1_at11/111+23500488..23501228uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os01g40980Os.33016.2.S1_x_at11/111+23501728..23513824DNA repair helicase family protein, expressed
LOC_Os01g40980Os.33016.3.S1_x_at10/111+23501728..23513824DNA repair helicase family protein, expressed
LOC_Os01g40990Os.8689.1.S1_at11/111+23516210..23540540expressed protein
LOC_Os01g41000Os.35033.1.S1_x_at2/111+23541470..23542145hypothetical protein
LOC_Os01g41000OsAffx.9169.1.S1_at2/111+23541470..23542145hypothetical protein
LOC_Os01g41010Os.23844.1.A1_at11/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41010Os.5777.1.S1_x_at5/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41020OsAffx.11416.1.S1_at11/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_at6/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_x_at3/111+23554720..23559224hypothetical protein
LOC_Os01g41030Os.45880.1.S1_at1/111+23562064..2356452050S ribosomal protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8689.1.S1_at--335--3031Chr01:23540019..23540043 (25 bp)
AATGCGTTACCCGTTCTTGATATGT
LOC_Os01g40990
Os.8689.1.S1_at--241--7891Chr01:23540053..23540077 (25 bp)
GGTTAGCTCAGTACATGTAATTCCA
LOC_Os01g40990
Os.8689.1.S1_at--922--5971Chr01:23540141..23540165 (25 bp)
GAGACATACTCCGTAGTTCTTTGGT
LOC_Os01g40990
Os.8689.1.S1_at--239--7771Chr01:23540203..23540227 (25 bp)
GGTGAAACTGCCCTGAGAATGCTGA
LOC_Os01g40990
Os.8689.1.S1_at--576--2331Chr01:23540238..23540262 (25 bp)
AAAGACCATGGTGTACAGTTTTCCT
LOC_Os01g40990
Os.8689.1.S1_at--835--2131Chr01:23540252..23540276 (25 bp)
ACAGTTTTCCTTCCTCATGTAAAGC
LOC_Os01g40990
Os.8689.1.S1_at--96--8731Chr01:23540269..23540293 (25 bp)
TGTAAAGCATGCGTGCACACCCATG
LOC_Os01g40990
Os.8689.1.S1_at--404--3311Chr01:23540284..23540308 (25 bp)
CACACCCATGCCTCTATATATATTT
LOC_Os01g40990
Os.8689.1.S1_at--654--8431Chr01:23540321..23540345 (25 bp)
GGCCTTTTTTGTGGCTCATTTGCAA
LOC_Os01g40990
Os.8689.1.S1_at--992--3131Chr01:23540450..23540474 (25 bp)
AATTAGTAGTAGTTCCGTTGCCTCT
LOC_Os01g40990
Os.8689.1.S1_at--899--10031Chr01:23540459..23540483 (25 bp)
TAGTTCCGTTGCCTCTTATTAAAGT
LOC_Os01g40990
Target Sequence 
AATGCGTTACCCGTTCTTGATATGTGCAAGCAATGGTTAGCTCAGTACATGTAATTCCATGTGCTGTNCCACCCCATAAA
TGCTGGAGTGNTCAGAACTACNCAAAAGAATGGTAACATCAGGAGACATACTCCGTAGTTCTTTGGTGAATGATAACATC
AGGGGACATANTACGTAGTTCTTTGGTGAAACTGCCCTGAGAATGCTGAGAGCAAGATCAAAGACCATGGTGTACAGTTT
TCCTTCCTCATGTAAAGCATGCGTGCACACCCATGCCTCTATATATATTTGTTCTTGCAAGTGGCCTTTTTTGTGGCTCA
TTTGCAAAGGGAGGTGCTTGTGGCTTCCTCTGTGGCTTAAAATTTTGTAGTTAACTAGTAGTACAAAGGGAGGTGCTTGT
GGCTTCCTCTGTGGCTTAAAATTTTGTAGTTAATTAGTAGTAGTTCCGTTGCCTCTTATTAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis