Browse Element(s) Details


Os.8710.1.S1_at

Description gb:AK065908.1
DB_XREF= gi:32975926
TID=Os.8710.1
CNT=36
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8710 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013045L08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013045L08, full insert sequence.
FL= gb:AK065908.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4824011/11Dynamin-related protein 1A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48200Os.27638.1.S1_at11/115+27547570..27553180Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os05g48210Os.27660.1.S1_at11/115+27554824..27555702expressed protein
LOC_Os05g48220Os.39014.1.S1_at8/115+27557400..2755946460S ribosomal protein L33-B, putative, expressed
LOC_Os05g48230Os.25211.1.S1_at11/115+27559844..27564573expressed protein
LOC_Os05g48240Os.8710.1.S1_at11/115+27564708..27570395Dynamin-related protein 1A, putative, expressed
LOC_Os05g48250NANA5+27574407..27575238hypothetical protein
LOC_Os05g48260OsAffx.27365.1.S1_at11/115+27577574..27581528condensation domain-containing protein, putative, expressed
LOC_Os05g48270Os.25562.1.S1_at11/115+27583058..27586077auxin-responsive protein, putative, expressed
LOC_Os05g48280OsAffx.15144.1.S1_at6/115+27590665..27596587expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000266biological_processmitochondrial fission
GO:0000911biological_processcytokinesis by cell plate formation
GO:0007005biological_processmitochondrion organization and biogenesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009920biological_processcell plate formation (sensu Magnoliophyta)
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0010152biological_processpollen maturation
GO:0016192biological_processvesicle-mediated transport
GO:0005874cellular_componentmicrotubule
GO:0009504cellular_componentcell plate
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0003924molecular_functionGTPase activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8710.1.S1_at--369--3691Chr05:27565427..27565451 (25 bp)
CTATTGTCTACTGTCAAGTGCGGGA
LOC_Os05g48240
Os.8710.1.S1_at--51--1991Chr05:27565390..27565414 (25 bp)
ACTGCTCGATCACTTCTTTACTGAA
LOC_Os05g48240
Os.8710.1.S1_at--51--9051Chr05:27565101..27565125 (25 bp)
TGCATGGTCCAAATAGTCCTGATCA
LOC_Os05g48240
Os.8710.1.S1_at--539--4951Chr05:27565015..27565039 (25 bp)
GCATATATAGCTGATTTTACCCCGT
LOC_Os05g48240
Os.8710.1.S1_at--124--10351Chr05:27565000..27565024 (25 bp)
TTTACCCCGTTCTAGGTCATTCATA
LOC_Os05g48240
Os.8710.1.S1_at--752--7131Chr05:27564985..27565009 (25 bp)
GTCATTCATAGATCAACGCAGCTGT
LOC_Os05g48240
Os.8710.1.S1_at--25--6151Chr05:27564960..27564984 (25 bp)
GAGGTGTCATTTGGTTTGTGCTTTT
LOC_Os05g48240
Os.8710.1.S1_at--446--8691Chr05:27564944..27564968 (25 bp)
TGTGCTTTTGTTCCTTGTGCTTGAG
LOC_Os05g48240
Os.8710.1.S1_at--7--6431Chr05:27564919..27564943 (25 bp)
GATCTAGGAGACACCAGGCTGCTGT
LOC_Os05g48240
Os.8710.1.S1_at--18--191Chr05:27564856..27564880 (25 bp)
ATTTTTGTCACAGCCCATTCTTTCG
LOC_Os05g48240
Os.8710.1.S1_at--494--3591Chr05:27564841..27564865 (25 bp)
CATTCTTTCGTTCCGTTTACATATA
LOC_Os05g48240
Target Sequence 
CTATTGTCTACTGTCAAGTGCGGGAGGCAAAGCGCTCACTGCTCGATCACTTCTTTACTGAATTGGGAGCAAGAGAGATT
AAACAACTTTCTAAGCTTCTTGATGAAGACCCCGNCCGTCATGGAACGGAGGACTAATCTTGCGAAGAGGCTGGAGCTAT
ATCGGAGTGCTCAAGCAGAAATTGATGCGGTTGCATGGTCCAAATAGTCCTGATCATCTACTTATCATACTCATNTTTCT
CCTTTACTCCCAGTTGGTGATCCTCCCCTATCTTGGGGCATATATAGCTGATTTTACCCCGTTCTAGGTCATTCATAGAT
CAACGCAGCTGTGAGGTGTCATTTGGTTTGTGCTTTTGTTCCTTGTGCTTGAGGATCTAGGAGACACCAGGCTGCTGTAC
TTTTTGTATTACGACCAAGTTCATATATCGTGTTTAATTTTTGTCACAGCCCATTCTTTCGTTCCGTTTACATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis