Browse Element(s) Details


Os.8770.1.S1_at

Description gb:AK103838.1
DB_XREF= gi:32989047
TID=Os.8770.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8770 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148H01, full insert sequence.
FL= gb:AK103838.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0765011/11zinc-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07630Os.24697.1.A1_s_at11/112+3950336..3955896Copper-transporting ATPase RAN1, putative, expressed
LOC_Os02g07640OsAffx.24152.1.S1_at11/112+3964023..3965483hypothetical protein
LOC_Os02g07650Os.8770.1.S1_at11/112+3971428..3975143zinc-binding protein, putative, expressed
LOC_Os02g07659NANA2+3980820..3981482NA
LOC_Os02g07670Os.23828.1.S1_at11/112+3992040..3995073urease accessory family protein, putative, expressed
LOC_Os02g07680Os.5129.2.S1_a_at11/112+3995977..4006874Cytochrome P450 97B2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8770.1.S1_at--764--6191Chr02:3974572..3974596 (25 bp)
GAGGAAGGGTGCACCCCACAGATCA
LOC_Os02g07650
Os.8770.1.S1_at--199--8711Chr02:3974601..3974625 (25 bp)
TGTCCTAAGCCTAATCACCACTTTG
LOC_Os02g07650
Os.8770.1.S1_at--957--771Chr02:3974643..3974667 (25 bp)
ATGTGCCATTAATAGCAGCTAGCTG
LOC_Os02g07650
Os.8770.1.S1_at--975--9531Chr02:3974719..3974743 (25 bp)
TCTAGCTTTTAGTGTGTCATGTCAT
LOC_Os02g07650
Os.8770.1.S1_at--167--6871Chr02:3974844..3974868 (25 bp)
GTTTGTGTGATCTAGCTTAGCTTAA
LOC_Os02g07650
Os.8770.1.S1_at--291--152Chr02:3974874..3974898 (25 bp)
ATTAGCTTAGCTAGGGCCACTTCCA
LOC_Os02g07650
Os.8770.1.S1_at--906--3691Chr02:3974884..3974908 (25 bp)
CTAGGGCCACTTCCAAGCTAATAGG
LOC_Os02g07650
Os.8770.1.S1_at--732--111Chr02:3974972..3974996 (25 bp)
ATTCTCCTACTGTTACAGGCCTAGG
LOC_Os02g07650
Os.8770.1.S1_at--765--8431Chr02:3974989..3975013 (25 bp)
GGCCTAGGTAGCTGAGTCACAGGTA
LOC_Os02g07650
Os.8770.1.S1_at--273--5011Chr02:3975029..3975053 (25 bp)
GCATGGCTTCCCCTACATGATAGTG
LOC_Os02g07650
Os.8770.1.S1_at--358--2111Chr02:3975043..3975067 (25 bp)
ACATGATAGTGTGTGGCTACCAATT
LOC_Os02g07650
Target Sequence 
GAGGAAGGGTGCACCCCACAGATCACCCCTGTCCTAAGCCTAATCACCACTTTGCCCCCCTAGCTACATATATGTGCCAT
TAATAGCAGCTAGCTGTTAATTAATTACTAGTAGTAGCTAAGCTAGCCCCNAGCTGTACTAGCTAGTTCTAGCTTTTAGT
GTGTCATGTCATTATNGCCCTATGATTAGCCATGTAGAGAGAGATGAGTGTGTGTGTTAATTTGTGTGTTGGTTGGTTGG
TTGGATGGGTTCTTTGGGAGGTAGGGGCTTTTGTTTGTGTGATCTAGCTTAGCTTAAGGTTAATTAGCTTAGCTAGGGCC
ACTTCCAAGCTAATAGGCACTTAGGCAGTGTTTTGATGGGAGACAGAGAGGGAGGGAGAAAGAGAGGAAAAAAGCAAGCA
ATTCTCCTACTGTTACAGGCCTAGGTAGCTGAGTCACAGGTATGTGGGGCCCAGGTTGCATGGCTTCCCCTACATGATAG
TGTGTGGCTACCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis