Browse Element(s) Details


Os.23828.1.S1_at

Description gb:AK119397.1
DB_XREF= gi:37989020
TID=Os.23828.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-D10, full insert sequence.
FL= gb:AK119397.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0767011/11urease accessory family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07650Os.8770.1.S1_at11/112+3971428..3975143zinc-binding protein, putative, expressed
LOC_Os02g07659NANA2+3980820..3981482NA
LOC_Os02g07670Os.23828.1.S1_at11/112+3992040..3995073urease accessory family protein, putative, expressed
LOC_Os02g07680Os.5129.2.S1_a_at11/112+3995977..4006874Cytochrome P450 97B2, putative, expressed
LOC_Os02g07690OsAffx.24153.1.S1_s_at11/112+4008988..4010133VQ motif family protein, expressed
LOC_Os02g07700Os.55302.1.S1_at11/112+4014560..4015310expressed protein
LOC_Os02g07710OsAffx.2540.1.S1_at9/112+4015960..4023036expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006807biological_processnitrogen compound metabolism
GO:0016151molecular_functionnickel ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23828.1.S1_at--356--1311Chr02:3992686..3992710 (25 bp)
AGATGATGTCTGTACAACTGCGCCC
LOC_Os02g07670
Os.23828.1.S1_at--921--3591Chr02:3992490..3992602 (25 bp)
CATTCGGTCGCATGGGCACTGGGAT
LOC_Os02g07670
Os.23828.1.S1_at--1150--811Chr02:3992467..3992491 (25 bp)
ATGGTTGCTCGGATAACCGCAGTGA
LOC_Os02g07670
Os.23828.1.S1_at--501--7031Chr02:3992429..3992453 (25 bp)
GTACAGCTTCCTGAGACATCATCTG
LOC_Os02g07670
Os.23828.1.S1_at--567--4531Chr02:3992376..3992400 (25 bp)
GCCCATATCCTGCATCATGAAGCTA
LOC_Os02g07670
Os.23828.1.S1_at--175--2711Chr02:3992357..3992381 (25 bp)
AAGCTAGCGGCCATCTGACTGTTGA
LOC_Os02g07670
Os.23828.1.S1_at--730--2411Chr02:3992288..3992312 (25 bp)
AAAAATTGTCTTCGCATACGCCTGC
LOC_Os02g07670
Os.23828.1.S1_at--407--9311Chr02:3992263..3992287 (25 bp)
TCCCCGTAGTTGATTGAGCATGCTT
LOC_Os02g07670
Os.23828.1.S1_at--1122--311Chr02:3992157..3992181 (25 bp)
ATGACCCTCTTTCTGTACTTTACAA
LOC_Os02g07670
Os.23828.1.S1_at--606--10471Chr02:3992138..3992162 (25 bp)
TTACAATAAATCCTCCTTCCTAGTC
LOC_Os02g07670
Os.23828.1.S1_at--1141--7551Chr02:3992081..3992105 (25 bp)
GGGCTGGACCCAACTTATGTTAGTT
LOC_Os02g07670
Target Sequence 
AGATGATGTCTGTACAACTGCGCCCTCCCACTTCTGCCGGAGGTCGCTACTCGACAAGATCACAACCCCTACATCCCCAG
AGGCCTCCAATCATCGCCTCCTGTAGTCCATTCGGTCGCATGGGCACTGGGATGGTTGCTCGGATAACCGCAGTGAGCAC
AGAATCTGTGTACAGCTTCCTGAGACATCATCTGGCAGCACTGGAACCATTCCTTGGCGCTTGCCCATATCCTGCATCAT
GAAGCTAGCGGCCATCTGACTGTTGATGGATCATCATGAAATCTTCACTTCCGACGAAGAATGAAGATGTAAAAATTGTC
TTCGCATACGCCTGCTCCCCGTAGTTGATTGAGCATGCTTTGATTTTGGTTGTACATGTTATAGTTCTTTGTGAATTTCT
GAGTAAAAGAAGATACTCTGGGAATTGGGCAGCTGATGATCATGACCCTCTTTCTGTACTTTACAATAAATCCTCCTTCC
TAGTCTTGGTGGGCCAGGCTGAAATGTTGGATTCGTTGGGCTGGACCCAACTTATGTTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis