Browse Element(s) Details


OsAffx.24153.1.S1_s_at

Description tigr:9630.m00720
TID=OsAffx.24153.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0769011/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07670Os.23828.1.S1_at11/112+3992040..3995073urease accessory family protein, putative, expressed
LOC_Os02g07680Os.5129.2.S1_a_at11/112+3995977..4006874Cytochrome P450 97B2, putative, expressed
LOC_Os02g07690OsAffx.24153.1.S1_s_at11/112+4008988..4010133VQ motif family protein, expressed
LOC_Os02g07700Os.55302.1.S1_at11/112+4014560..4015310expressed protein
LOC_Os02g07710OsAffx.2540.1.S1_at9/112+4015960..4023036expressed protein
LOC_Os02g07720Os.18588.1.S1_at11/112+4024688..4028680Choline-phosphate cytidylyltransferase B, putative, expressed
LOC_Os02g07730Os.50559.1.S1_at11/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07730OsAffx.2542.1.S1_at9/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07740Os.22794.1.A1_at11/112+4034219..4038403expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24153.1.S1_s_at--223--5671Chr02:4009555..4009579 (25 bp)
GACATGTTTCTCCACGGGTTCGAGT
LOC_Os02g07690
OsAffx.24153.1.S1_s_at--431--9051Chr02:4009607..4009631 (25 bp)
TGCAGAGCATCCAGGCGGCGCAGAT
LOC_Os02g07690
OsAffx.24153.1.S1_s_at--78--4291Chr02:4009658..4009682 (25 bp)
CCTCGGCTAACAACGCTAATGGCTA
LOC_Os02g07690
OsAffx.24153.1.S1_s_at--91--871Chr02:4009676..4009700 (25 bp)
ATGGCTACAACTTCGGATGATTAAT
LOC_Os02g07690
OsAffx.24153.1.S1_s_at--180--6291Chr02:4009691..4009715 (25 bp)
GATGATTAATTAGCCAACCTCGCAC
LOC_Os02g07690
OsAffx.24153.1.S1_s_at--769--3231Chr02:4009705..4009729 (25 bp)
CAACCTCGCACTTGATTAGTTTGGG
LOC_Os02g07690
OsAffx.24153.1.S1_s_at--709--6351Chr02:4009781..4009805 (25 bp)
GATGCCATTAGTTAAGGCTCTTTAA
LOC_Os02g07690
OsAffx.24153.1.S1_s_at--533--6551Chr02:4009840..4009864 (25 bp)
GATTATTTCTCCTCTTTTGTCTGCA
LOC_Os02g07690
OsAffx.24153.1.S1_s_at--693--10251Chr02:4009855..4009879 (25 bp)
TTTGTCTGCACCATGATGTTGTTTT
LOC_Os02g07690
OsAffx.24153.1.S1_s_at--109--8831Chr02:4009906..4009930 (25 bp)
TGTTGGCCTTTGCTGTAGAGAGATA
LOC_Os02g07690
OsAffx.24153.1.S1_s_at--648--6031Chr02:4009925..4009949 (25 bp)
GAGATATACCCAGATTAGCAAGGCT
LOC_Os02g07690
Target Sequence 
GACATGTTTCTCCACGGGTTCGAGTCGTCGTCGGCGGAGGAGAGGCTGCTGCTGCAGAGCATCCAGGCGGCGCAGATGCT
GCCGGCGGCGAGGCCGACGACCACCTCGGCTAACAACGCTAATGGCTACAACTTCGGATGATTAATTAGCCAACCTCGCA
CTTGATTAGTTTGGGTAATTAAGGTAAGCATCAAGTGCTAATTAGAGAGAGAGAAATTGAATTAAAGATGCCATTAGTTA
AGGCTCTTTAATTACATGATCAACCAAGCATCATATGGATTGCTTGATTATTTCTCCTCTTTTGTCTGCACCATGATGTT
GTTTTAATTTTAATTTTTAAGGTTTTATTTTTGTTGGCCTTTGCTGTAGAGAGATATACCCAGATTAGCAAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24153.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis