Browse Element(s) Details


Os.22794.1.A1_at

Description gb:AK060232.1
DB_XREF= gi:32970250
TID=Os.22794.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22794 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-A05, full insert sequence.
FL= gb:AK060232.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0774011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07690OsAffx.24153.1.S1_s_at11/112+4008988..4010133VQ motif family protein, expressed
LOC_Os02g07700Os.55302.1.S1_at11/112+4014560..4015310expressed protein
LOC_Os02g07710OsAffx.2540.1.S1_at9/112+4015960..4023036expressed protein
LOC_Os02g07720Os.18588.1.S1_at11/112+4024688..4028680Choline-phosphate cytidylyltransferase B, putative, expressed
LOC_Os02g07730Os.50559.1.S1_at11/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07730OsAffx.2542.1.S1_at9/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07740Os.22794.1.A1_at11/112+4034219..4038403expressed protein
LOC_Os02g07750Os.7332.1.S1_at11/112+4038442..4042354LEM3 family/CDC50 family protein, expressed
LOC_Os02g07760Os.9838.1.S1_at11/112+4044612..4052271Succinate semialdehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g07770OsAffx.24154.1.S1_at11/112+4058205..4060228transfactor, putative, expressed
LOC_Os02g07770OsAffx.24154.1.S1_x_at11/112+4058205..4060228transfactor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22794.1.A1_at--368--8131Chr02:4036766..4036790 (25 bp)
GGACTTGGTAATCCTTGATCCTCCA
LOC_Os02g07740
Os.22794.1.A1_at--732--6371Chr02:4036782..4036806 (25 bp)
GATCCTCCAAAGTTGGCACCTCGAA
LOC_Os02g07740
Os.22794.1.A1_at--936--1031Chr02:4037433..4037457 (25 bp)
AGGTGCTACAAAGTGCCTCGGGTAT
LOC_Os02g07740
Os.22794.1.A1_at--651--5391Chr02:4037463..4037487 (25 bp)
GAAGCTTGAACGCTCTTGCGATGCA
LOC_Os02g07740
Os.22794.1.A1_at--578--5431Chr02:4037562..4038008 (25 bp)
GAACCATTCAGGGTGCTGCATCAAT
LOC_Os02g07740
Os.22794.1.A1_at--781--4751Chr02:4037998..4038022 (25 bp)
GCTGCATCAATGACCGGCCGAAAGG
LOC_Os02g07740
Os.22794.1.A1_at--927--8251Chr02:4038045..4038069 (25 bp)
GGCAGCCTGTGATCATCCCGTAGAT
LOC_Os02g07740
Os.22794.1.A1_at--575--1291Chr02:4038066..4038090 (25 bp)
AGATCCTGCATACCCTGAAGGCCGA
LOC_Os02g07740
Os.22794.1.A1_at--807--5191Chr02:4038098..4038122 (25 bp)
GCAATTACTTGCTCCGAGTGACCTG
LOC_Os02g07740
Os.22794.1.A1_at--381--10471Chr02:4038163..4038187 (25 bp)
TTACCGCACAGCATTTTCCTAAGAG
LOC_Os02g07740
Os.22794.1.A1_at--379--4591Chr02:4038312..4038336 (25 bp)
GCGCAGATCATTATTTACCCTTGTT
LOC_Os02g07740
Target Sequence 
GGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCT
TGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCTGGAGNTATGACCCAAAGC
GGCCTCTTNCCTCAGAACCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTTNTACGCCAAGCAGGGGCAG
CCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATNTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAA
AAAAAAAAGGCTTAGAAGCCTTNTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTT
CAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTT
GAAGATTATTTGTTAATTTNTAGCGCAGATCATTATTTACCCTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22794.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis