Browse Element(s) Details


Os.55302.1.S1_at

Description gb:AK107829.1
DB_XREF= gi:32993038
TID=Os.55302.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55302 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-G10, full insert sequence.
FL= gb:AK107829.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0770011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07670Os.23828.1.S1_at11/112+3992040..3995073urease accessory family protein, putative, expressed
LOC_Os02g07680Os.5129.2.S1_a_at11/112+3995977..4006874Cytochrome P450 97B2, putative, expressed
LOC_Os02g07690OsAffx.24153.1.S1_s_at11/112+4008988..4010133VQ motif family protein, expressed
LOC_Os02g07700Os.55302.1.S1_at11/112+4014560..4015310expressed protein
LOC_Os02g07710OsAffx.2540.1.S1_at9/112+4015960..4023036expressed protein
LOC_Os02g07720Os.18588.1.S1_at11/112+4024688..4028680Choline-phosphate cytidylyltransferase B, putative, expressed
LOC_Os02g07730Os.50559.1.S1_at11/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07730OsAffx.2542.1.S1_at9/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07740Os.22794.1.A1_at11/112+4034219..4038403expressed protein
LOC_Os02g07750Os.7332.1.S1_at11/112+4038442..4042354LEM3 family/CDC50 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55302.1.S1_at--924--5611Chr02:4014779..4014803 (25 bp)
GACAAGCGCGTTGGATTATCCCCAG
LOC_Os02g07700
Os.55302.1.S1_at--678--871Chr02:4014945..4014969 (25 bp)
ATGGCGCGCAACGTCAGGTTGGTTA
LOC_Os02g07700
Os.55302.1.S1_at--1103--9611Chr02:4014958..4014982 (25 bp)
TCAGGTTGGTTAGCGTCCCGGTGAT
LOC_Os02g07700
Os.55302.1.S1_at--127--9311Chr02:4015048..4015072 (25 bp)
TCCCTAGCGGAACGAGCGCACCTTG
LOC_Os02g07700
Os.55302.1.S1_at--475--8371Chr02:4015100..4015124 (25 bp)
GGCGTCGATGGAGTTCCTCACTGTA
LOC_Os02g07700
Os.55302.1.S1_at--614--3794Chr02:4015185..4015209 (25 bp)
CTCGACTTTGGCCATGATGGTATGC
LOC_Os02g07700
Os.55302.1.S1_at--834--7851Chr02:4015203..4015227 (25 bp)
GGTATGCATGTAGCAACTCCTGCCT
LOC_Os02g07700
Os.55302.1.S1_at--418--1491Chr02:4015214..4015238 (25 bp)
AGCAACTCCTGCCTTGGGACGAAGG
LOC_Os02g07700
Os.55302.1.S1_at--401--8231Chr02:4015237..4015261 (25 bp)
GGCAAGGCATATCATCACCTTCTCG
LOC_Os02g07700
Os.55302.1.S1_at--888--4311Chr02:4015254..4015278 (25 bp)
CCTTCTCGGCATGATTTGTGATGAG
LOC_Os02g07700
Os.55302.1.S1_at--1043--10431Chr02:4015285..4015309 (25 bp)
TTAGTAATCGAGCTACATTGGTGTA
LOC_Os02g07700
Target Sequence 
GACAAGCGCGTTGGATTATCCCCAGCCTCCGTAAGCTCCAGCCCACTGCCACCGCTGCTCCAGCTAGCTCCGGCTCCCGA
CGACGCCGAACCAGGTCACCTTCTTCTGCGCCTCGCCCAACGTCTTCAGGAACTCCTCACGCCACCGGAAGCCGCACTCC
CCCATGATGGCGCGCAACGTCAGGTTGGTTAGCGTCCCGGTGATCTGCCTGCTCACGTTCAGTGCCGGCGGTGGCGGCGA
TGGCGCTGACGAGGCGGGCGACCTGCTCCTCCCTAGCGGAACGAGCGCACCTTGCCGAAGAGTACCCCCCCCCCCCCGGT
GGCGTCGATGGAGTTCCTCACTGTACGCCCAGCCATGGAGGTGGGAGCCCCCGGGCTAGGCGCCAGGAGGAGGCCGAGCT
CCATCCTCGACTTTGGCCATGATGGTATGCATGTAGCAACTCCTGCCTTGGGACGAAGGCAAGGCATATCATCACCTTCT
CGGCATGATTTGTGATGAGCAGGAATTAGTAATCGAGCTACATTGGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis