Browse Element(s) Details


OsAffx.2540.1.S1_at

Description tigr:9630.m00722
TID=OsAffx.2540.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g077109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07670Os.23828.1.S1_at11/112+3992040..3995073urease accessory family protein, putative, expressed
LOC_Os02g07680Os.5129.2.S1_a_at11/112+3995977..4006874Cytochrome P450 97B2, putative, expressed
LOC_Os02g07690OsAffx.24153.1.S1_s_at11/112+4008988..4010133VQ motif family protein, expressed
LOC_Os02g07700Os.55302.1.S1_at11/112+4014560..4015310expressed protein
LOC_Os02g07710OsAffx.2540.1.S1_at9/112+4015960..4023036expressed protein
LOC_Os02g07720Os.18588.1.S1_at11/112+4024688..4028680Choline-phosphate cytidylyltransferase B, putative, expressed
LOC_Os02g07730Os.50559.1.S1_at11/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07730OsAffx.2542.1.S1_at9/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07740Os.22794.1.A1_at11/112+4034219..4038403expressed protein
LOC_Os02g07750Os.7332.1.S1_at11/112+4038442..4042354LEM3 family/CDC50 family protein, expressed
LOC_Os02g07760Os.9838.1.S1_at11/112+4044612..4052271Succinate semialdehyde dehydrogenase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2540.1.S1_at--212--1711NONE
ACCAAACTCCCAGGAACAATTTCAG
NONE
OsAffx.2540.1.S1_at--235--9671Chr02:4019670..4019694 (25 bp)
TCAGCTGCAGAAACAACCAAGGACA
LOC_Os02g07710
OsAffx.2540.1.S1_at--292--10751Chr02:4018145..4018165 (21 bp)
TTGAAGTTCCAGGATCTCGTTACCT
LOC_Os02g07710
OsAffx.2540.1.S1_at--277--5571NONE
GAAAGACTATTGGATCAGTTTGCAA
NONE
OsAffx.2540.1.S1_at--435--2111Chr02:4017009..4017104 (25 bp)
ACATGGAGTTGGTCATCGGTACTAA
LOC_Os02g07710
OsAffx.2540.1.S1_at--207--7851Chr02:4016992..4017016 (25 bp)
GGTACTAATCAGTCCATACATCTAT
LOC_Os02g07710
OsAffx.2540.1.S1_at--1103--191Chr02:4016942..4016966 (25 bp)
ATTTGCAACAGATGCTTTCCCTTCT
LOC_Os02g07710
OsAffx.2540.1.S1_at--678--3655Chr10:5602024..5602048 (25 bp)
CTTCTCTGTTCAGTTCACACCAGAA
NONE
OsAffx.2540.1.S1_at--701--2392Chr07:25901709..25901733 (25 bp)
AAAACATCCCCGGTCAGTTTGAGCA
NONE
OsAffx.2540.1.S1_at--107--5591Chr02:4016833..4016857 (25 bp)
GAAATGTTTGCCAATCTGCAACCAA
LOC_Os02g07710
OsAffx.2540.1.S1_at--1040--3052Chr07:25907196..25907216 (21 bp)
AATCTGCAACCAAACTCTTGGACTG
NONE
Target Sequence 
ACCAAACTCCCAGGAACAATTTCAGCTGCAGAAACAACCAAGGACATCAAGTTGCAGACCAAGAAAAAAGAACCAATACA
GATAAAAGGGAATACACAATCAAAGACATGTATAAGAGACATAATCGAGTCTGAAGAATTAAAAATCAAGAAGACAGTTG
AAGTTCCAGGATCTCGTTACCTGCAGGATTTTGAAAAAGGCAAAAAGTCAGAGACAATTGAATCAGAGATTGGCGAAAAT
AAAGCACAATTACTTTATGATCAATACATATTTCTTAATGAAAATGAAAGACTATTGGATCAGTTTGCAAAATATGAAAC
ATGGAGTTGGTCATCGGTACTAATCAGTCCATACATCTATGAAACGCAATGCAGAATTCAGATAAATTTGCAACAGATGC
TTTCCCTTCTCTGTTCAGTTCACACCAGAATTAAGGCAAAACGTAACCCATACAAATTCAACAGGAAAACATCCCCGGTC
AGTTTGAGCACTGAGAAATGTTTGCCAATCTGCAACCAAACTCTTGGACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis