Browse Element(s) Details


Os.7332.1.S1_at

Description gb:AK069063.1
DB_XREF= gi:32979087
TID=Os.7332.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7332 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007B15, full insert sequence.
FL= gb:AK069063.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0775011/11LEM3 family/CDC50 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07700Os.55302.1.S1_at11/112+4014560..4015310expressed protein
LOC_Os02g07710OsAffx.2540.1.S1_at9/112+4015960..4023036expressed protein
LOC_Os02g07720Os.18588.1.S1_at11/112+4024688..4028680Choline-phosphate cytidylyltransferase B, putative, expressed
LOC_Os02g07730Os.50559.1.S1_at11/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07730OsAffx.2542.1.S1_at9/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07740Os.22794.1.A1_at11/112+4034219..4038403expressed protein
LOC_Os02g07750Os.7332.1.S1_at11/112+4038442..4042354LEM3 family/CDC50 family protein, expressed
LOC_Os02g07760Os.9838.1.S1_at11/112+4044612..4052271Succinate semialdehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g07770OsAffx.24154.1.S1_at11/112+4058205..4060228transfactor, putative, expressed
LOC_Os02g07770OsAffx.24154.1.S1_x_at11/112+4058205..4060228transfactor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7332.1.S1_at--365--6871Chr02:4039466..4039490 (25 bp)
GTTTGGATGAGAACTGCTGCACTTC
LOC_Os02g07750
Os.7332.1.S1_at--792--7851Chr02:4039421..4039445 (25 bp)
GGTAGGATACACACTGACCTCAAGA
LOC_Os02g07750
Os.7332.1.S1_at--833--5331Chr02:4039332..4039356 (25 bp)
GAAGTTGGTACTTTCTACCTCGACA
LOC_Os02g07750
Os.7332.1.S1_at--1091--9531Chr02:4039319..4039343 (25 bp)
TCTACCTCGACATGGCTCGGTGGAA
LOC_Os02g07750
Os.7332.1.S1_at--456--10151Chr02:4039271..4039295 (25 bp)
TATCTCAGTGTTGGTGGACTCTGCT
LOC_Os02g07750
Os.7332.1.S1_at--828--3911Chr02:4039241..4039265 (25 bp)
CTGGCATTTGCATTCACCTTGCTGT
LOC_Os02g07750
Os.7332.1.S1_at--623--1811Chr02:4038691..4038715 (25 bp)
ACCCTGCAGGCCGTTAATAAGCTCT
LOC_Os02g07750
Os.7332.1.S1_at--917--10791Chr02:4038584..4038608 (25 bp)
TTGTTAGCCGTGCTGGAGTGCCAAT
LOC_Os02g07750
Os.7332.1.S1_at--809--7271Chr02:4038567..4038591 (25 bp)
GTGCCAATACGGCTTATACCAATTA
LOC_Os02g07750
Os.7332.1.S1_at--769--10071Chr02:4038544..4038568 (25 bp)
TAGGGCAGCGTTTATGAGCAACACT
LOC_Os02g07750
Os.7332.1.S1_at--518--231Chr02:4038488..4038512 (25 bp)
ATATATACAGCCTTCTTTTGTTGAA
LOC_Os02g07750
Target Sequence 
GTTTGGATGAGAACTGCTGCACTTCCAACATTCAGAAAGCTGTATGGTAGGATACACACTGACCTCAAGAAAGGTGACAC
CATTACGGTGACATTGGAGAACAACTACAACACATATAGCTTTAGTGGCAAAAAGAAGTTGGTACTTTCTACCTCGACAT
GGCTCGGTGGAAAGAATGATTTTCTTGGTCTAGCATATCTCAGTGTTGGTGGACTCTGCTTCTTCCTGGCATTTGCATTC
ACCTTGCTGTACTTGATAAAACCAAGGAAAATGGGTGACAACAACTACTTGTCATGGAACAGAAACCCTGCAGGCCGTTA
ATAAGCTCTTCAAACTTTTAAGTTGCAAATTCAACATGAAGCAAGTTGGATTATGGATTCAAATGTATCTTGTACTAGAT
AGCGGTTTTATTTGTTAGCCGTGCTGGAGTGCCAATACGGCTTATACCAATTAGGGCAGCGTTTATGAGCAACACTGATG
TACATTATGTTGCAAAGAAAAANATATATATATACAGCCTTCTTTTGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis