Browse Element(s) Details


Os.8818.1.S1_at

Description gb:AK102888.1
DB_XREF= gi:32988097
TID=Os.8818.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1294_F06.3 (OJ1294_F06.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112L14, full insert sequence.
FL= gb:AK102888.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7265011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72610Os.18229.1.S1_at11/111+42455186..42457054glycosyltransferase, putative, expressed
LOC_Os01g72620OsAffx.24015.1.S1_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.3.S1_x_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.1.S1_at3/111+42461140..42462786hypothetical protein
LOC_Os01g72630Os.34199.1.S1_at11/111+42465498..42469884expressed protein
LOC_Os01g72630Os.34199.2.S1_s_at11/111+42465498..42469884expressed protein
LOC_Os01g72650Os.8818.2.S1_x_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72650Os.8818.1.S1_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72660OsAffx.11831.1.S1_at11/111+42487651..42488127hypothetical protein
LOC_Os01g72670Os.38326.1.A1_a_at11/111+42489440..42493310expressed protein
LOC_Os01g72680OsAffx.11832.1.S1_at11/111+42496260..42499052NB-ARC domain containing protein
LOC_Os01g72690Os.7395.1.S1_s_at11/111+42504684..42510567ATP-NAD kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8818.1.S1_at--723--6651Chr01:42483455..42483479 (25 bp)
GTTGAGATTCTGATGTACTCCACTT
LOC_Os01g72650
Os.8818.1.S1_at--324--6271Chr01:42483466..42483490 (25 bp)
GATGTACTCCACTTTTTTCAAGGGA
LOC_Os01g72650
Os.8818.1.S1_at--56--2251Chr01:42483492..42483516 (25 bp)
AAATTCTGATGTACTGATGGAGCTA
LOC_Os01g72650
Os.8818.1.S1_at--421--5911Chr01:42483511..42483535 (25 bp)
GAGCTAAAGCTTGCGTATTCCCCAA
LOC_Os01g72650
Os.8818.1.S1_at--130--9591Chr01:42483526..42483550 (25 bp)
TATTCCCCAACACGAAGTACCTTGT
LOC_Os01g72650
Os.8818.1.S1_at--996--5331Chr01:42483539..42483563 (25 bp)
GAAGTACCTTGTAGCTTTGGTCTGT
LOC_Os01g72650
Os.8818.1.S1_at--1087--8751Chr01:42483548..42483572 (25 bp)
TGTAGCTTTGGTCTGTTGGATGCAT
LOC_Os01g72650
Os.8818.1.S1_at--340--7991Chr01:42483565..42483589 (25 bp)
GGATGCATAAGCGTGAAACTAGTTT
LOC_Os01g72650
Os.8818.1.S1_at--1047--2451Chr01:42483620..42483644 (25 bp)
AACAAGTACTTGTTCCTTGGGATGA
LOC_Os01g72650
Os.8818.1.S1_at--787--7951Chr01:42483651..42483675 (25 bp)
GGATACACGTGATCAGTAACCATTT
LOC_Os01g72650
Os.8818.1.S1_at--1149--2631Chr01:42483668..42483692 (25 bp)
AACCATTTTATCTGAAGTCACAGCA
LOC_Os01g72650
Target Sequence 
GTTGAGATTCTGATGTACTCCACTTTTTTCAAGGGAAAAATTCTGATGTACTGATGGAGCTAAAGCTTGCGTATTCCCCA
ACACGAAGTACCTTGTAGCTTTGGTCTGTTGGATGCATAAGCGTGAAACTAGTTTTCAATCAGAATTGATACAAGGGAAC
AAGGGAACAAGTACTTGTTCCTTGGGATGAAATATTGGATACACGTGATCAGTAACCATTTTATCTGAAGTCACAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis