Browse Element(s) Details


Os.8818.2.S1_x_at

Description gb:NM_189320.1
DB_XREF= gi:34905723
GEN=OJ1294_F06.3
TID=Os.8818.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1294_F06.3 (OJ1294_F06.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1294_F06.3 (OJ1294_F06.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7265011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72610Os.18229.1.S1_at11/111+42455186..42457054glycosyltransferase, putative, expressed
LOC_Os01g72620OsAffx.24015.1.S1_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.3.S1_x_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.1.S1_at3/111+42461140..42462786hypothetical protein
LOC_Os01g72630Os.34199.1.S1_at11/111+42465498..42469884expressed protein
LOC_Os01g72630Os.34199.2.S1_s_at11/111+42465498..42469884expressed protein
LOC_Os01g72650Os.8818.2.S1_x_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72650Os.8818.1.S1_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72660OsAffx.11831.1.S1_at11/111+42487651..42488127hypothetical protein
LOC_Os01g72670Os.38326.1.A1_a_at11/111+42489440..42493310expressed protein
LOC_Os01g72680OsAffx.11832.1.S1_at11/111+42496260..42499052NB-ARC domain containing protein
LOC_Os01g72690Os.7395.1.S1_s_at11/111+42504684..42510567ATP-NAD kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8818.2.S1_x_at--621--2771Chr01:42482479..42482503 (25 bp)
AAGACCTTGGTGGAGCATGCGCATT
LOC_Os01g72650
Os.8818.2.S1_x_at--1018--4991Chr01:42482623..42482647 (25 bp)
GCATGTGCTGGCCTTAACGGCATGA
LOC_Os01g72650
Os.8818.2.S1_x_at--10--8371Chr01:42482677..42482701 (25 bp)
GGCGTGTTAACTGATCATCCTGGGC
LOC_Os01g72650
Os.8818.2.S1_x_at--401--4551Chr01:42482798..42482822 (25 bp)
GCCCATTTCATGGAATTCCTGCCAA
LOC_Os01g72650
Os.8818.2.S1_x_at--761--9971Chr01:42482843..42482867 (25 bp)
TACCAACACAAGTCCTGCAGCTAAA
LOC_Os01g72650
Os.8818.2.S1_x_at--206--5851Chr01:42483033..42483057 (25 bp)
GACCAGGAGGAATACTCGCTGCTTT
LOC_Os01g72650
Os.8818.2.S1_x_at--361--2991Chr01:42483213..42483237 (25 bp)
AATGTCGTAGAGTATCCTGCTGGCA
LOC_Os01g72650
Os.8818.2.S1_x_at--877--1351Chr01:42483270..42483294 (25 bp)
AGAGACAACGCTTTGGCTTCTAACA
LOC_Os01g72650
Os.8818.2.S1_x_at--783--2471Chr01:42483294..42483318 (25 bp)
AACACTGCACTCGAAGCTGGCTGTA
LOC_Os01g72650
Os.8818.2.S1_x_at--559--991Chr01:42483340..42483364 (25 bp)
AGGAGGCTTCATTCATGGCTGCTCA
LOC_Os01g72650
Os.8818.2.S1_x_at--253--7171Chr01:42483399..42483423 (25 bp)
GTCTCTGCGGGATATGCTCCATATG
LOC_Os01g72650
Target Sequence 
AAGACCTTGGTGGAGCATGCGCATTTCTTGAGTACATTGATCACTCCATTACATCAAAGGCATGTGCTGGCCTTAACGGC
ATGAAGCTTGGTGGATGCGTAATAACTGCTGTTGGCGTGTTAACTGATCATCCTGGGCAGGCTGGCAATGAAGCTTGCCC
ATTTCATGGAATTCCTGCCAATCCCAAACCTCTTCTTGCAGTACCAACACAAGTCCTGCAGCTAAAAAATGTGTTTGACC
AGGAGGAATACTCGCTGCTTTCAAAATATGAGGTAGATGCAGTATTGGAAGATGTACGTGTGAAGTGTGCAAGGTATGGA
GCTGTGAAATCCATAAATGTCGTAGAGTATCCTGCTGGCAGTGACAACACCAAGGCACCTGCAGTAGATGCTAGAGACAA
CGCTTTGGCTTCTAACAACACTGCACTCGAAGCTGGCTGTATACTTGTAGAGTTCTTGTGCAAGGAGGCTTCATTCATGG
CTGCTCATTCACTCCATGGCCGGCCTTTTGGCAGCAGGATTGTCTCTGCGGGATATGCTCCATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8818.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis