Browse Element(s) Details


Os.18229.1.S1_at

Description gb:AK068399.1
DB_XREF= gi:32978417
TID=Os.18229.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1294_F06.1 (OJ1294_F06.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149N20, full insert sequence.
FL= gb:AK068399.1 gb:AK106051.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7261011/11glycosyltransferase, putative, expressed
LOC_Os01g726203/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72590NANA1+42437325..42437531hypothetical protein
LOC_Os01g72600OsAffx.2464.1.S1_at11/111+42449501..42450490Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os01g72610Os.18229.1.S1_at11/111+42455186..42457054glycosyltransferase, putative, expressed
LOC_Os01g72620OsAffx.24015.1.S1_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.3.S1_x_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.1.S1_at3/111+42461140..42462786hypothetical protein
LOC_Os01g72630Os.34199.1.S1_at11/111+42465498..42469884expressed protein
LOC_Os01g72630Os.34199.2.S1_s_at11/111+42465498..42469884expressed protein
LOC_Os01g72650Os.8818.2.S1_x_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72650Os.8818.1.S1_at11/111+42476558..42483700RNA recognition motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18229.1.S1_at--611--7932Chr01:42462514..42462538 (25 bp)
GGATTATCGGATAGCAGCGGCAGAA
LOC_Os01g72620
Os.18229.1.S1_at--1091--652Chr01:42462479..42462503 (25 bp)
ATGAATCCATCGGTTTCTCGAGCGG
LOC_Os01g72620
Os.18229.1.S1_at--394--10012Chr01:42462453..42462477 (25 bp)
TAGACGTACGTGACAAGTGCTCCAT
LOC_Os01g72620
Os.18229.1.S1_at--748--2851Chr01:42455399..42455423 (25 bp)
AAGTGCTCCATTGCAACCAGTTGTT
LOC_Os01g72610
Os.18229.1.S1_at--538--3251Chr01:42455386..42455410 (25 bp)
CAACCAGTTGTTTAGGCGATTGCTA
LOC_Os01g72610
Os.18229.1.S1_at--879--51Chr01:42455368..42455392 (25 bp)
ATTGCTAAGGCGACGGCCGGAGATT
LOC_Os01g72610
Os.18229.1.S1_at--916--6591Chr01:42455347..42455371 (25 bp)
GATTGGCCATGGTGCTGTAAGGATA
LOC_Os01g72610
Os.18229.1.S1_at--1124--9771Chr01:42455330..42455354 (25 bp)
TAAGGATAGCCGTCTGGCTCTGCAG
LOC_Os01g72610
Os.18229.1.S1_at--21--8331Chr01:42455315..42455339 (25 bp)
GGCTCTGCAGCGCATACAGTTGGAC
LOC_Os01g72610
Os.18229.1.S1_at--1106--6591Chr01:42455297..42455321 (25 bp)
GTTGGACTCGAAACGTATACCAGTT
LOC_Os01g72610
Os.18229.1.S1_at--122--1011Chr01:42455242..42455266 (25 bp)
AGGATATAACTACTACTCTCTGGAT
LOC_Os01g72610
Target Sequence 
GGATTATCGGATAGCAGCGGCAGAAGCAGCCATGGATGAATCCATCGGTTTCTCGAGCGGATAGACGTACGTGACAAGTG
CTCCATTGCAACCAGTTGTTTAGGCGATTGCTAAGGCGACGGCCGGAGATTGGCCATGGTGCTGTAAGGATAGCCGTCTG
GCTCTGCAGCGCATACAGTTGGACTCGAAACGTATACCAGTTGGTAGCTTTTTAAGGGCGAGGTGCCAAGTTAGGATATA
ACTACTACTCTCTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis