Browse Element(s) Details


OsAffx.2464.1.S1_at

Description tigr:9629.m07182
TID=OsAffx.2464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Armadillobeta-catenin-like repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7260011/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72579NANA1+42429725..42430106NA
LOC_Os01g72590NANA1+42437325..42437531hypothetical protein
LOC_Os01g72600OsAffx.2464.1.S1_at11/111+42449501..42450490Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os01g72610Os.18229.1.S1_at11/111+42455186..42457054glycosyltransferase, putative, expressed
LOC_Os01g72620OsAffx.24015.1.S1_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.3.S1_x_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.1.S1_at3/111+42461140..42462786hypothetical protein
LOC_Os01g72630Os.34199.1.S1_at11/111+42465498..42469884expressed protein
LOC_Os01g72630Os.34199.2.S1_s_at11/111+42465498..42469884expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2464.1.S1_at--539--7331Chr01:42449938..42449962 (25 bp)
GTGCAGGCGCTCTTCGCGCTCATCA
LOC_Os01g72600
OsAffx.2464.1.S1_at--696--9571Chr01:42449928..42449952 (25 bp)
TCTTCGCGCTCATCATGACGGACGG
LOC_Os01g72600
OsAffx.2464.1.S1_at--468--8031Chr01:42449846..42449870 (25 bp)
GGAGAGCCTGGACGCGTTCACGAGG
LOC_Os01g72600
OsAffx.2464.1.S1_at--455--6271Chr01:42449822..42449846 (25 bp)
GATGTCCGGGCTGCGCATTCTCGTC
LOC_Os01g72600
OsAffx.2464.1.S1_at--378--7571Chr01:42449815..42449839 (25 bp)
GGGCTGCGCATTCTCGTCGACCTCG
LOC_Os01g72600
OsAffx.2464.1.S1_at--617--4011Chr01:42449792..42449816 (25 bp)
CGTCGAGCAAGGTGGCGCGTCGACA
LOC_Os01g72600
OsAffx.2464.1.S1_at--1005--4131Chr01:42449777..42449801 (25 bp)
CGCGTCGACACCAAGAACAAGGGAG
LOC_Os01g72600
OsAffx.2464.1.S1_at--55--3371Chr01:42449769..42449793 (25 bp)
CACCAAGAACAAGGGAGAACGCGGC
LOC_Os01g72600
OsAffx.2464.1.S1_at--501--9091Chr01:42449736..42449760 (25 bp)
TGCTCAACCTTGTCGTGGCCGGCGG
LOC_Os01g72600
OsAffx.2464.1.S1_at--667--4771Chr01:42449603..42449627 (25 bp)
GCTGCTGCGGGCGTTGGAGTGCGGC
LOC_Os01g72600
OsAffx.2464.1.S1_at--468--7571Chr01:42449536..42449560 (25 bp)
GGGCTGGTGCAGTCCGACCCGTACA
LOC_Os01g72600
Target Sequence 
GTGCAGGCGCTCTTCGCGCTCATCATGACGGACGGCCGGAGCGGCATCATGGAGGACGCCACCGCCGTCGTCGCGCAGGT
CGCCGGGTGCGCGGAGAGCCTGGACGCGTTCACGAGGATGTCCGGGCTGCGCATTCTCGTCGACCTCGTCGAGCAAGGTG
GCGCGTCGACACCAAGAACAAGGGAGAACGCGGCGGCCGCGCTGCTCAACCTTGTCGTGGCCGGCGGCGAGCGCGCCGTG
GCGGAGGTGATCGCGGTGGGCGGCGCGGAGGACGCGGTGAGGGAGCTCGCGGAGGACGCCACGGCGAGCGCGAGGGGGAA
GGCGAAGGCGGAGTCGCTGCTGCGGGCGTTGGAGTGCGGCGGCGCGAGGCGGCGAGAGCACCGGCTCGCCGACTTCCTGA
ACGGGCTGGTGCAGTCCGACCCGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis