Browse Element(s) Details


Os.8851.1.S1_at

Description gb:AK061399.1
DB_XREF= gi:32971417
TID=Os.8851.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-F06, full insert sequence.
FL= gb:AK061399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3563011/11MTD1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35620Os.17691.1.S1_at11/118+22313705..22317627RSH2, putative, expressed
LOC_Os08g35630Os.8851.1.S1_at11/118+22329557..22332044MTD1, putative, expressed
LOC_Os08g35640OsAffx.6036.1.S1_at11/118+22335917..22336445hypothetical protein
LOC_Os08g35650OsAffx.6037.1.S1_at11/118+22342214..22346327hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8851.1.S1_at--106--5551Chr08:22331470..22331494 (25 bp)
GAAACTTCACAGGAGACAGCAGCAG
LOC_Os08g35630
Os.8851.1.S1_at--896--2791Chr08:22331518..22331542 (25 bp)
AAGAGGCTTGCCAGTCTGAGCAGAA
LOC_Os08g35630
Os.8851.1.S1_at--359--9551Chr08:22331545..22331569 (25 bp)
TCTTTGGTGACCTTGGCTAGTAGCA
LOC_Os08g35630
Os.8851.1.S1_at--324--2252Chr08:22331655..22331679 (25 bp)
AAATTCTGCGGTTTATAATGCTCCA
LOC_Os08g35630
Os.8851.1.S1_at--457--9771Chr08:22331670..22331694 (25 bp)
TAATGCTCCAGCACTACAATTAGGA
LOC_Os08g35630
Os.8851.1.S1_at--478--2511Chr08:22331709..22331733 (25 bp)
AACATCATCTGTGCCTGTGAGGTCA
LOC_Os08g35630
Os.8851.1.S1_at--1109--151Chr08:22331747..22331771 (25 bp)
ATTTGCGCCGTCTGCATAGGCCAAG
LOC_Os08g35630
Os.8851.1.S1_at--495--3231Chr08:22331768..22331792 (25 bp)
CAAGATCCTCATGTCGTCTCAAAGA
LOC_Os08g35630
Os.8851.1.S1_at--718--6252Chr08:22331883..22331907 (25 bp)
GATGGTGTTGTCTGTGCCTGCAAGA
LOC_Os08g35630
Os.8851.1.S1_at--126--332Chr08:22331948..22331972 (25 bp)
ATACTGATATCGATGGCCTAAGCCC
LOC_Os08g35630
Os.8851.1.S1_at--1146--1651Chr08:22331968..22331992 (25 bp)
AGCCCTAAGGTGTATGTCTGTATCA
LOC_Os08g35630
Target Sequence 
GAAACTTCACAGGAGACAGCAGCAGAAGTTTATGAAACTGGACCCCCTAAGAGGCTTGCCAGTCTGAGCAGAAACTCTTT
GGTGACCTTGGCTAGTAGCAGTTCCAGGAGCAGCAGTAGTATCAGCATCGAAGAAACCGAGCTCACTGAGCAGCTTCATT
CTCCTCCGTCGCNTGCTAATGATGAAAATTCTGCGGTTTATAATGCTCCAGCACTACAATTAGGATCCTGTGATCCTAAA
ACATCATCTGTGCCTGTGAGGTCATTTTCAATGATGGATTTGCGCCGTCTGCATAGGCCAAGATCCTCATGTCGTCTCAA
AGATCAGAAAACGACAGANTAGCGTAGTATTCTTGATGTTTTACTGGGGCTGCTAGTGTCTTTCTGTATTGTGAATAAAT
AAGGGGGGAGTTTGATGGTGTTGTCTGTGCCTGCAAGATGATTGGGGCTACTGTGTTGTATGTAAATTAGCATACTACAT
ACTGATATCGATGGCCTAAGCCCTAAGGTGTATGTCTGTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis