Browse Element(s) Details


Os.8896.1.S1_a_at

Description gb:AK073252.1
DB_XREF= gi:32983275
TID=Os.8896.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023A06, full insert sequence.
FL= gb:AK073252.1 gb:AK102900.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2068911/113' exoribonuclease family domain 1-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20630OsAffx.18962.1.S1_at10/1111+11934921..11935356hypothetical protein
LOC_Os11g20630Os.20212.1.S1_at5/1111+11934921..11935356hypothetical protein
LOC_Os11g20640OsAffx.19542.3.S1_x_at7/1111+11938771..11945309retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g20640OsAffx.21754.1.S1_x_at1/1111+11938771..11945309retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g20650NANA11+11946602..11948046retrotransposon protein, putative, LINE subclass
LOC_Os11g20660OsAffx.31078.1.S1_at11/1111+11950768..11952335hypothetical protein
LOC_Os11g20670Os.7307.3.S1_x_at1/1111+11953647..11954911retrotransposon protein, putative, unclassified
LOC_Os11g20689Os.8896.1.S1_a_at11/1111+11958113..119656613' exoribonuclease family domain 1-containing protein, putative, expressed
LOC_Os11g20689Os.50608.1.S1_at11/1111+11958113..119656613' exoribonuclease family domain 1-containing protein, putative, expressed
LOC_Os11g20689OsAffx.21235.1.S1_at1/1111+11958113..119656613' exoribonuclease family domain 1-containing protein, putative, expressed
LOC_Os11g20710NANA11+11975264..11975976retrotransposon, putative, centromere-specific
LOC_Os11g20720NANA11+11977447..11979306retrotransposon, putative, centromere-specific
LOC_Os11g20730NANA11+11979889..11980374hypothetical protein
LOC_Os11g20740NANA11+11984505..11984800hypothetical protein
LOC_Os11g20750Os.5711.1.S1_at2/1111+11986947..11988625hypothetical protein
LOC_Os11g20750OsAffx.30488.1.S1_at1/1111+11986947..11988625hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0000175molecular_function3'-5'-exoribonuclease activity
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8896.1.S1_a_at--1014--2971Chr11:11964543..11964567 (25 bp)
AATGTTCCATTTTCCCTTACATGTG
LOC_Os11g20689
Os.8896.1.S1_a_at--713--731Chr11:11964583..11964607 (25 bp)
ATGTTCTAGCGGATCCAACTGCTGA
LOC_Os11g20689
Os.8896.1.S1_a_at--683--5691Chr11:11964626..11964650 (25 bp)
GACTTCTGTGACTATTGTTCTCGAT
LOC_Os11g20689
Os.8896.1.S1_a_at--1149--8791Chr11:11964641..11964665 (25 bp)
TGTTCTCGATTCTTCAGACCAGATA
LOC_Os11g20689
Os.8896.1.S1_a_at--899--8011Chr11:11964684..11964708 (25 bp)
GGAGGTGCAGTGACATCTATGACAA
LOC_Os11g20689
Os.8896.1.S1_a_at--370--10811Chr11:11965404..11965428 (25 bp)
TTGTAGTAGCTCTTTCCTATCTCTT
LOC_Os11g20689
Os.8896.1.S1_a_at--942--3751Chr11:11965424..11965448 (25 bp)
CTCTTGGTTGTACTCGTAGCGTGAT
LOC_Os11g20689
Os.8896.1.S1_a_at--773--4551Chr11:11965457..11965481 (25 bp)
GCACCTTTGGCTACTATCCGTTTAA
LOC_Os11g20689
Os.8896.1.S1_a_at--712--7251Chr11:11965496..11965520 (25 bp)
GTCCGTACCTGCCTATGATTTTATT
LOC_Os11g20689
Os.8896.1.S1_a_at--115--7191Chr11:11965551..11965575 (25 bp)
GTCTGTCTTATGTCTTCTTTGTATT
LOC_Os11g20689
Os.8896.1.S1_a_at--13--3131Chr11:11965588..11965612 (25 bp)
AATTTTAGCGTCTATCTACCTTCGG
LOC_Os11g20689
Target Sequence 
AATGTTCCATTTTCCCTTACATGTGCACTTCACAAGGATAATGTTCTAGCGGATCCAACTGCTGAAGAAGAATCAATAAT
AGAGACTTCTGTGACTATTGTTCTCGATTCTTCAGACCAGATAGTGTCAATACAAAAACCTGGAGGTGCAGTGACATCTA
TGACAACTATTAAGGAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTCATGGACAATGTTGAA
GCAATGGAAGTCGACCAAACTGATTAAGTTTGTCACAGTTCTGATTCAGTGAATCTAACCAAATTATTTTTGTAGTAGCT
CTTTCCTATCTCTTGGTTGTACTCGTAGCGTGATAAATTTTAGCACCTTTGGCTACTATCCGTTTAATTAAATAAGTAAC
AGTCCGTACCTGCCTATGATTTTATTGAATTAAAGTGGTATCATAATTTTATTTGAGTCTGTCTTATGTCTTCTTTGTAT
TCNTAGTATGAGGAATTTTAGCGTCTATCTACCTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8896.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis