Browse Element(s) Details


Os.8923.1.A1_s_at

Description gb:CA999220
DB_XREF= gi:27576526
DB_XREF=S234O_B12
TID=Os.8923.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8923 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_568941.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3211011/11exostosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32070NANA2+18948609..18948815hypothetical protein
LOC_Os02g32080Os.55336.1.S1_at9/112+18950650..18951478expressed protein
LOC_Os02g32090OsAffx.20387.1.S1_x_at2/112+18955010..18960748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g32100NANA2+18961663..18964570retrotransposon protein, putative, unclassified
LOC_Os02g32110Os.8923.1.A1_s_at11/112+18966946..18970500exostosin family protein, putative, expressed
LOC_Os02g32110Os.8923.1.A1_at11/112+18966946..18970500exostosin family protein, putative, expressed
LOC_Os02g32120Os.6327.1.S1_at11/112+18974997..18978323Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor, putative, expressed
LOC_Os02g32130NANA2+18979121..18979324hypothetical protein
LOC_Os02g32140OsAffx.2825.1.S1_x_at1/112+18981231..18982637AP2 domain containing protein, expressed
LOC_Os02g32150OsAffx.12315.1.S1_at11/112+18985087..18985701hypothetical protein
LOC_Os02g32160Os.8647.1.S1_at11/112+18988145..18995211Copine family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8923.1.A1_s_at--517--4151Chr02:18967518..18967542 (25 bp)
GACGAAATCGGTGTTTTTGTTGACG
LOC_Os02g32110
Os.8923.1.A1_s_at--83--6291Chr02:18967488..18967512 (25 bp)
GATGTTCCAAGGCTAGACTCAATCC
LOC_Os02g32110
Os.8923.1.A1_s_at--62--5131Chr02:18967429..18967453 (25 bp)
GCAAAGATTACTCGCCAATCCATCA
LOC_Os02g32110
Os.8923.1.A1_s_at--50--5091Chr02:18967381..18967405 (25 bp)
GCAGCCAGCACAACCTAGAGATGCA
LOC_Os02g32110
Os.8923.1.A1_s_at--785--2651Chr02:18967296..18967320 (25 bp)
AAGCCAGGCGAGAAGCATCTCAACT
LOC_Os02g32110
Os.8923.1.A1_s_at--1094--7551Chr02:18967263..18967287 (25 bp)
GGGCCTGTAGCAGATCTGAAACCTT
LOC_Os02g32110
Os.8923.1.A1_s_at--250--2551Chr02:18967214..18967238 (25 bp)
AACTCGGCTTTGATGTTATTGTGAA
LOC_Os02g32110
Os.8923.1.A1_s_at--176--10491Chr02:18967186..18967210 (25 bp)
TTAAGTTATGTCCTTTTCCACTGAG
LOC_Os02g32110
Os.8923.1.A1_s_at--967--6171Chr02:18967164..18967188 (25 bp)
GAGGAGTTTCTAGTTTCACATAGCT
LOC_Os02g32110
Os.8923.1.A1_s_at--162--1251Chr02:18967123..18967147 (25 bp)
AGTTGTATATCTCCAATGTCGCTGA
LOC_Os02g32110
Os.8923.1.A1_s_at--741--7231Chr02:18967106..18967130 (25 bp)
GTCGCTGAGCTAAATGCCTACTCTG
LOC_Os02g32110
Target Sequence 
GACGAAATCGGTGTTTTTGTTGACGAGGAGGATGTTCCAAGGCTAGACTCAATCCTCACATCCATCCCAATTGATGATAT
CCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATG
CATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCAT
CTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGT
TATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTG
TATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8923.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis