Browse Element(s) Details


Os.55336.1.S1_at

Description gb:AK107896.1
DB_XREF= gi:32993105
TID=Os.55336.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.55336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-F03, full insert sequence.
FL= gb:AK107896.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g320809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32050OsAffx.12313.1.S1_at10/112+18925775..18927141hypothetical protein
LOC_Os02g32060Os.7494.1.S1_at11/112+18930451..18933648Nudix hydrolase 13, mitochondrial precursor, putative, expressed
LOC_Os02g32070NANA2+18948609..18948815hypothetical protein
LOC_Os02g32080Os.55336.1.S1_at9/112+18950650..18951478expressed protein
LOC_Os02g32090OsAffx.20387.1.S1_x_at2/112+18955010..18960748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g32100NANA2+18961663..18964570retrotransposon protein, putative, unclassified
LOC_Os02g32110Os.8923.1.A1_s_at11/112+18966946..18970500exostosin family protein, putative, expressed
LOC_Os02g32110Os.8923.1.A1_at11/112+18966946..18970500exostosin family protein, putative, expressed
LOC_Os02g32120Os.6327.1.S1_at11/112+18974997..18978323Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55336.1.S1_at--1124--10691Chr02:18950881..18950905 (25 bp)
TTGCGTGCATGATCGGGTGCTTCAC
LOC_Os02g32080
Os.55336.1.S1_at--168--7331Chr02:18950897..18950921 (25 bp)
GTGCTTCACGCAGATGTTCGGGTGC
LOC_Os02g32080
Os.55336.1.S1_at--375--9151Chr02:18950961..18950985 (25 bp)
TGCGTCGTCAGCTGCAACCAGAACA
LOC_Os02g32080
Os.55336.1.S1_at--1071--5491Chr02:18950981..18951005 (25 bp)
GAACAGCATCGTCTGCATGGTGCGT
LOC_Os02g32080
Os.55336.1.S1_at--373--10031Chr02:18951144..18951168 (25 bp)
TAGACATGTACAGCTCAGCTCACTC
LOC_Os02g32080
Os.55336.1.S1_at--834--9891Chr02:18951169..18951193 (25 bp)
TACTATACCCCTACAAGTGCTAGCT
LOC_Os02g32080
Os.55336.1.S1_at--151--1131Chr02:18951184..18951208 (25 bp)
AGTGCTAGCTCCTGATACGACATTA
LOC_Os02g32080
Os.55336.1.S1_at--737--771Chr02:18951212..18951236 (25 bp)
ATGTGCCTAGCTACGTGATATATAA
LOC_Os02g32080
Os.55336.1.S1_at--376--10131NONE
TATGCATTTATGTGGCTGAACACGT
NONE
Os.55336.1.S1_at--494--8971NONE
TGAACACGTGTTTGTGCCAGCCATA
NONE
Os.55336.1.S1_at--617--5511Chr02:18951369..18951393 (25 bp)
GAAAATGGGTCGTCAGTCATACTGA
LOC_Os02g32080
Target Sequence 
TTGCGTGCATGATCGGGTGCTTCACGCAGATGTTCGGGTGCGCCTTCGGGTGCATGGCGAAGGGCCCCGACACGACGCTC
TGCGTCGTCAGCTGCAACCAGAACAGCATCGTCTGCATGGTGCGTTGCGCCCTCACGCCGCCGCCGCCCAAGCCCAAGCC
CACGCCGCCGCCGCCCGCGCCCACGCCCAAGCCTCCCGCGCCCTCGCCGTCGCCGCCGCCGCCCAAAGCCGCCGGCCACG
GCGTCGCNGGCGACCCCTTGGCCTAGACATGTACAGCTCAGCTCACTCTACTATACCCCTACAAGTGCTAGCTCCTGATA
CGACATTATAAATGTGCCTAGCTACGTGATATATAATCAAGANTCAAGAAAATACAAACTGATAAAAGAAAAAAAATCAA
GAAATACGTATCTATGTAGATCTCATTGTTTTCATATATGCATTTATGTGGCTGAACACGTGTTTGTGCCAGCCATATGT
AACAAATGAAAATGGGTCGTCAGTCATACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis