Browse Element(s) Details


Os.7494.1.S1_at

Description gb:AK072610.1
DB_XREF= gi:32982633
TID=Os.7494.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132J05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132J05, full insert sequence.
FL= gb:AK072610.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3206011/11Nudix hydrolase 13, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32020OsAffx.12312.1.S1_at9/112+18905133..18907062expressed protein
LOC_Os02g32030Os.4705.1.S1_at11/112+18911065..18915987Elongation factor 2, putative, expressed
LOC_Os02g32040NANA2+18917753..18918472AP2 domain containing protein
LOC_Os02g32050OsAffx.12313.1.S1_at10/112+18925775..18927141hypothetical protein
LOC_Os02g32060Os.7494.1.S1_at11/112+18930451..18933648Nudix hydrolase 13, mitochondrial precursor, putative, expressed
LOC_Os02g32070NANA2+18948609..18948815hypothetical protein
LOC_Os02g32080Os.55336.1.S1_at9/112+18950650..18951478expressed protein
LOC_Os02g32090OsAffx.20387.1.S1_x_at2/112+18955010..18960748retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7494.1.S1_at--316--8371Chr02:18930945..18930969 (25 bp)
GGCGTGCAACTAGTATAGCTGTCAA
LOC_Os02g32060
Os.7494.1.S1_at--39--10511Chr02:18930915..18930939 (25 bp)
TTCAACCGCAAACATGGCTACCAGA
LOC_Os02g32060
Os.7494.1.S1_at--643--8311Chr02:18930900..18930924 (25 bp)
GGCTACCAGAAAATTCAGAATCTCT
LOC_Os02g32060
Os.7494.1.S1_at--867--10551Chr02:18930845..18930869 (25 bp)
TTCTTGAGCAGCTAGTGATGAGTCT
LOC_Os02g32060
Os.7494.1.S1_at--134--6311Chr02:18930829..18930853 (25 bp)
GATGAGTCTGTAATACCTGCAGTTG
LOC_Os02g32060
Os.7494.1.S1_at--82--1771Chr02:18930815..18930839 (25 bp)
ACCTGCAGTTGTTGCCCTGCTTGAA
LOC_Os02g32060
Os.7494.1.S1_at--780--4531Chr02:18930802..18930826 (25 bp)
GCCCTGCTTGAACAACTGCACATTG
LOC_Os02g32060
Os.7494.1.S1_at--938--2311Chr02:18930771..18930795 (25 bp)
AAAGATTCTATGACCTGAACCCCTC
LOC_Os02g32060
Os.7494.1.S1_at--710--5111Chr02:18930738..18930762 (25 bp)
GCACTTCCATCCACAACTTTGGTAT
LOC_Os02g32060
Os.7494.1.S1_at--371--6891Chr02:18930517..18930541 (25 bp)
GTATATGCCTTCAATATCCTTAGAT
LOC_Os02g32060
Os.7494.1.S1_at--676--571Chr02:18930502..18930526 (25 bp)
ATCCTTAGATGGACTTTCTGTATAG
LOC_Os02g32060
Target Sequence 
GGCGTGCAACTAGTATAGCTGTCAANCCCCTTCAACCGCAAACATGGCTACCAGAAAATTCAGAATCTCTAATCACTTCT
TTAGAATCTTTCTTTTTTTTTTCTTGAGCAGCTAGTGATGAGTCTGTAATACCTGCAGTTGTTGCCCTGCTTGAACAACT
GCACATTGTCTAAGAAAGATTCTATGACCTGAACCCCTCAGCTCCAGGCACTTCCATCCACAACTTTGGTATTGGTTGGC
TTCGGAGGTTAAGGCAAAAAACTGTTTCATAGGTGACTGAAACTTTAACCTCTGTGGATGCATATTGCAGTGTCCATTTG
CATGATCAATCCAATGTCTGCTGATGACTGGGGTCTCCTGTGTAATTCTTCTGTGTAATATTCAAAAATTAGTAAGGTAT
ATAACATGTTTGCATGTGTTCATGTGTTGTATATGCCTTCAATATCCTTAGATGGACTTTCTGTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis