Browse Element(s) Details


OsAffx.12313.1.S1_at

Description tigr:9630.m03030
TID=OsAffx.12313.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3205010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32009NANA2+18903070..18903450NA
LOC_Os02g32020OsAffx.12312.1.S1_at9/112+18905133..18907062expressed protein
LOC_Os02g32030Os.4705.1.S1_at11/112+18911065..18915987Elongation factor 2, putative, expressed
LOC_Os02g32040NANA2+18917753..18918472AP2 domain containing protein
LOC_Os02g32050OsAffx.12313.1.S1_at10/112+18925775..18927141hypothetical protein
LOC_Os02g32060Os.7494.1.S1_at11/112+18930451..18933648Nudix hydrolase 13, mitochondrial precursor, putative, expressed
LOC_Os02g32070NANA2+18948609..18948815hypothetical protein
LOC_Os02g32080Os.55336.1.S1_at9/112+18950650..18951478expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12313.1.S1_at--1060--3611Chr02:18927053..18927077 (25 bp)
CTTGTGCTCAGCAGGCTTGGATTCA
LOC_Os02g32050
OsAffx.12313.1.S1_at--734--931Chr02:18926953..18926977 (25 bp)
AGGCACTGGCACGATCTTGAGAGAT
LOC_Os02g32050
OsAffx.12313.1.S1_at--180--5111Chr02:18926874..18926898 (25 bp)
GCACGGGAAATGGAGCTTCTAGCAT
LOC_Os02g32050
OsAffx.12313.1.S1_at--143--3171Chr02:18926839..18926863 (25 bp)
AATTGCTTTGGCGATTCAATGGACT
LOC_Os02g32050
OsAffx.12313.1.S1_at--631--5411Chr02:18926781..18926805 (25 bp)
GAAGCGGTACGCATGCTGCAATATG
LOC_Os02g32050
OsAffx.12313.1.S1_at--389--151Chr02:18926747..18926771 (25 bp)
ATTTGTCTACCCTGGCCTATATAAT
LOC_Os02g32050
OsAffx.12313.1.S1_at--510--3271NONE
CAAAATTGCCATGGCCCAGGGTCTA
NONE
OsAffx.12313.1.S1_at--689--3471Chr02:18925885..18925909 (25 bp)
CAGGGTCTAGCCCAACTAGCAATGA
LOC_Os02g32050
OsAffx.12313.1.S1_at--703--1471Chr02:18925868..18925892 (25 bp)
AGCAATGAGCCCCTATTGGTTTGGC
LOC_Os02g32050
OsAffx.12313.1.S1_at--452--411Chr02:18925834..18925858 (25 bp)
ATCAGGCTAGCATCTATGGTCCAAT
LOC_Os02g32050
OsAffx.12313.1.S1_at--107--811Chr02:18925819..18925843 (25 bp)
ATGGTCCAATACTCTTTATTACCTA
LOC_Os02g32050
Target Sequence 
CTTGTGCTCAGCAGGCTTGGATTCAGAAATGGAGGAAACCACAGCCTGGATGGATGAAGCTTAATGTAGATGGCTCTTTT
GATCCGAATTATGAGAATGGAGGCACTGGCACGATCTTGAGAGATGAGAGGGGAACTGTCATCTTTTCTTCCTGCAGATT
TTTTGGAAGGTGCTCTGATGCACGGGAAATGGAGCTTCTAGCATACAAGGAAGGAATTGCTTTGGCGATTCAATGGACTC
TAAAACCGATCGTGGTGGAATCAGACTGCTTGGAAGCGGTACGCATGCTGCAATATGCAGAGAAGGATTTGTCTACCCTG
GCCTATATAATCAGGGAGATCAATGCTCTTATGTCTAGAAATAGGGAGATTGTTATTCAAAAATCCCCCGTAGTCAAAAT
TGCCATGGCCCAGGGTCTAGCCCAACTAGCAATGAGCCCCTATTGGTTTGGCCCGAGGCCCATCAGGCTAGCATCTATGG
TCCAATACTCTTTATTACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis