Browse Element(s) Details


Os.9023.1.S1_x_at

Description gb:AK101998.1
DB_XREF= gi:32987207
TID=Os.9023.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079K23, full insert sequence.
FL= gb:AK101998.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0401011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03989NANA1+1715767..1716172hypothetical protein
LOC_Os01g04000NANA1+1728355..1728747hypothetical protein
LOC_Os01g04010Os.9023.1.S1_x_at11/111+1735670..1736622expressed protein
LOC_Os01g04010Os.9023.1.S1_at11/111+1735670..1736622expressed protein
LOC_Os01g04020Os.4663.1.S1_at11/111+1743218..1745346AP2 domain containing protein, expressed
LOC_Os01g04020Os.4663.1.S2_at11/111+1743218..1745346AP2 domain containing protein, expressed
LOC_Os01g04030Os.16822.1.S1_at10/111+1751134..1754530Signal peptidase subunit family protein, expressed
LOC_Os01g04040NANA1+1754614..1755532Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor, putative
LOC_Os01g04050Os.3729.1.S1_at11/111+1756956..1757937Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9023.1.S1_x_at--1024--471Chr01:1736499..1736523 (25 bp)
ATCTGATGACAATGCCTCACGAACA
LOC_Os01g04010
Os.9023.1.S1_x_at--514--3011Chr01:1736509..1736533 (25 bp)
AATGCCTCACGAACAAAAATGAGAA
LOC_Os01g04010
Os.9023.1.S1_x_at--932--2731Chr01:1736532..1736556 (25 bp)
AAGAATGGCTTCATGCCTTCATACC
LOC_Os01g04010
Os.9023.1.S1_x_at--684--5291Chr01:1736534..1736558 (25 bp)
GAATGGCTTCATGCCTTCATACCAG
LOC_Os01g04010
Os.9023.1.S1_x_at--1029--851Chr01:1736536..1736560 (25 bp)
ATGGCTTCATGCCTTCATACCAGTA
LOC_Os01g04010
Os.9023.1.S1_x_at--305--4911Chr01:1736539..1736563 (25 bp)
GCTTCATGCCTTCATACCAGTACTA
LOC_Os01g04010
Os.9023.1.S1_x_at--569--9611Chr01:1736542..1736566 (25 bp)
TCATGCCTTCATACCAGTACTACGA
LOC_Os01g04010
Os.9023.1.S1_x_at--556--591Chr01:1736544..1736568 (25 bp)
ATGCCTTCATACCAGTACTACGACC
LOC_Os01g04010
Os.9023.1.S1_x_at--429--3651Chr01:1736548..1736572 (25 bp)
CTTCATACCAGTACTACGACCTTAC
LOC_Os01g04010
Os.9023.1.S1_x_at--976--9951Chr01:1736553..1736577 (25 bp)
TACCAGTACTACGACCTTACAAATA
LOC_Os01g04010
Os.9023.1.S1_x_at--867--1251Chr01:1736598..1736622 (25 bp)
AGATTTAATTTAATCAGCTGCCACG
LOC_Os01g04010
Target Sequence 
ATCTGATGACAATGCCTCACGAACAAAAATGAGAAGAATGGCTTCATGCCTTCATACCAGTACTACGACCTTACAAATAT
TTTATTTCAAGCAAACGAAAGATTTAATTTAATCAGCTGCCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9023.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis