Browse Element(s) Details


Os.4663.1.S2_at

Description gb:AK119645.1
DB_XREF= gi:37989268
TID=Os.4663.1
CNT=144
FEA=FLmRNA
TIER=FL+Stack
STK=39
UG=Os.4663 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-G05, full insert sequence.
FL= gb:AK062063.1 gb:AK101133.1 gb:AY341828.1 gb:AK102277.1 gb:AK063183.1 gb:AK119645.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0402011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04000NANA1+1728355..1728747hypothetical protein
LOC_Os01g04010Os.9023.1.S1_x_at11/111+1735670..1736622expressed protein
LOC_Os01g04010Os.9023.1.S1_at11/111+1735670..1736622expressed protein
LOC_Os01g04020Os.4663.1.S1_at11/111+1743218..1745346AP2 domain containing protein, expressed
LOC_Os01g04020Os.4663.1.S2_at11/111+1743218..1745346AP2 domain containing protein, expressed
LOC_Os01g04030Os.16822.1.S1_at10/111+1751134..1754530Signal peptidase subunit family protein, expressed
LOC_Os01g04040NANA1+1754614..1755532Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor, putative
LOC_Os01g04050Os.3729.1.S1_at11/111+1756956..1757937Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor, putative, expressed
LOC_Os01g04070OsAffx.22797.1.S1_at11/111+1761836..1765746Leucine Rich Repeat family protein, expressed
LOC_Os01g04080Os.30899.1.S1_at10/111+1768299..1769212expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009887biological_processorgan morphogenesis
GO:0010084biological_processspecification of organ axis polarity
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4663.1.S2_at--661--2071Chr01:1744662..1744686 (25 bp)
ACATTGACCCGATGGATTTCCGAGC
LOC_Os01g04020
Os.4663.1.S2_at--478--8351Chr01:1744689..1744713 (25 bp)
GGCTGGATGCTCTGGATATCTCCGA
LOC_Os01g04020
Os.4663.1.S2_at--500--251Chr01:1744704..1744728 (25 bp)
ATATCTCCGATGTGCCGGCTTACAT
LOC_Os01g04020
Os.4663.1.S2_at--324--2771Chr01:1744740..1744764 (25 bp)
AAGACGTACTCTTCACTGAGGACAT
LOC_Os01g04020
Os.4663.1.S2_at--569--3531Chr01:1744762..1744786 (25 bp)
CATGCTGCTTGGAGACTTCGCTGAA
LOC_Os01g04020
Os.4663.1.S2_at--1013--1751Chr01:1744800..1744824 (25 bp)
ACCTCGACGACATCGGTGATGACTT
LOC_Os01g04020
Os.4663.1.S2_at--208--7391Chr01:1744815..1744839 (25 bp)
GTGATGACTTCTGCGAGGATTTCCC
LOC_Os01g04020
Os.4663.1.S2_at--684--991Chr01:1744830..1744854 (25 bp)
AGGATTTCCCAGAGATACCCAGCGG
LOC_Os01g04020
Os.4663.1.S2_at--1027--6491Chr01:1744874..1744898 (25 bp)
GATATGTTCCGGCAGGTGGATTTCT
LOC_Os01g04020
Os.4663.1.S2_at--900--111Chr01:1744927..1744951 (25 bp)
ATTCATGTTGGTGTGATGGGCCTGT
LOC_Os01g04020
Os.4663.1.S2_at--793--8331Chr01:1745200..1745224 (25 bp)
GGCTGTCGTCTCTGTTATGGAAAGA
LOC_Os01g04020
Target Sequence 
ACATTGACCCGATGGATTTCCGAGCTGGGCTGGATGCTCTGGATATCTCCGATGTGCCGGCTTACATGAATGGCGAACAA
GACGTACTCTTCACTGAGGACATGCTGCTTGGAGACTTCGCTGAAGAAGATGACCTCGACCTCGACGACATCGGTGATGA
CTTCTGCGAGGATTTCCCAGAGATACCCAGCGGCTACGACTTCGGCCGTGGTGATATGTTCCGGCAGGTGGATTTCTGCG
TGTGAATTAAGAGCTTGCTAAAGTTATTCATGTTGGTGTGATGGGCCTGTGAGTGTGGGTGCTTGGGAGGAGATTTCTTG
GGTTTTTTCCCCGAGCAAAATCAATCTGCTCGTGCCCTTGAGATTTCAGTTCCGCCCATAAGAACTCCAACGCACATTTA
GCATTCGGAGAGTAATTTTGTTAGGTTAAAAGTATGGTAAGTTATAGGTGGTATGTTATGTTTTTCTTTTTCTTTTCTCA
ATGTTATCTGGTACCTAAGTTTGTCAAGAAAATCATAGTGGACAAGTCAAGTATTTGGGGCTGTCGTCTCTGTTATGGAA
AGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4663.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis