Browse Element(s) Details


Os.30899.1.S1_at

Description gb:AK108153.1
DB_XREF= gi:32993362
TID=Os.30899.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-F12, full insert sequence.
FL= gb:AK108153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0408010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04020Os.4663.1.S1_at11/111+1743218..1745346AP2 domain containing protein, expressed
LOC_Os01g04020Os.4663.1.S2_at11/111+1743218..1745346AP2 domain containing protein, expressed
LOC_Os01g04030Os.16822.1.S1_at10/111+1751134..1754530Signal peptidase subunit family protein, expressed
LOC_Os01g04040NANA1+1754614..1755532Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor, putative
LOC_Os01g04050Os.3729.1.S1_at11/111+1756956..1757937Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor, putative, expressed
LOC_Os01g04070OsAffx.22797.1.S1_at11/111+1761836..1765746Leucine Rich Repeat family protein, expressed
LOC_Os01g04080Os.30899.1.S1_at10/111+1768299..1769212expressed protein
LOC_Os01g04090Os.31762.2.S1_x_at11/111+1772846..1774907expressed protein
LOC_Os01g04090Os.31762.1.S1_at11/111+1772846..1774907expressed protein
LOC_Os01g04100Os.27368.1.A1_at11/111+1777892..1779183expressed protein
LOC_Os01g04100Os.45428.1.S1_at1/111+1777892..1779183expressed protein
LOC_Os01g04110Os.10066.2.S1_at5/111+1786432..1788237expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30899.1.S1_at--238--8371Chr01:1768828..1768852 (25 bp)
GGCGTGAAGCCGACGAGTTACCAGA
LOC_Os01g04080
Os.30899.1.S1_at--255--1611Chr01:1768768..1768792 (25 bp)
AGCTGCAGCGTGAATTCCGCCACGA
LOC_Os01g04080
Os.30899.1.S1_at--117--9871Chr01:1768580..1768604 (25 bp)
TACAGCAGCAGCTTACTACTATGGG
LOC_Os01g04080
Os.30899.1.S1_at--73--1531Chr01:1768552..1768576 (25 bp)
AGCAGAAATGGCAGCTCCGGCCATG
LOC_Os01g04080
Os.30899.1.S1_at--930--1051Chr01:1768522..1768546 (25 bp)
AGGGTTAGCCCGGTGATCAACGTGC
LOC_Os01g04080
Os.30899.1.S1_at--875--8611Chr01:1768479..1768503 (25 bp)
TGGTGAACATGCTGAGCTACTTGCT
LOC_Os01g04080
Os.30899.1.S1_at--311--2071Chr01:1768461..1768485 (25 bp)
ACTTGCTCTGCGACTGTGGCAACAA
LOC_Os01g04080
Os.30899.1.S1_at--936--7671Chr01:1768421..1768445 (25 bp)
GGGTTTCGGACTTAATTGCTAGCTT
LOC_Os01g04080
Os.30899.1.S1_at--1098--2971Chr01:1768355..1768378 (24 bp)
AATGTACTCATCATGCTTGCTAAGG
LOC_Os01g04080
Os.30899.1.S1_at--325--4831NONE
GCTAAGGTTCTAAATTCACTACTAC
NONE
Os.30899.1.S1_at--362--3311Chr01:1768320..1768344 (25 bp)
CACTACTACTAGTCAATTGGGCTAT
LOC_Os01g04080
Target Sequence 
GGCGTGAAGCCGACGAGTTACCAGAGGCGGCCGGGTTCTTGGACGTCGCCGTTCACGCGCAGCTGCAGCGTGAATTCCGC
CACGACGGCGGCGCCGCGGTCGGGGTCGGGGAGCTTCAGCTGCCCGTCGTTCCCGCTCATGCGGAGCCGATCGGCTGGCT
CGGCGGCCGCGGCGCAGGGCGGCGGCCTCGGCGGCGTCGTCTCGGGCGGCGGTCACCACCGGCCGCCGCAGCACAAGAAA
GCCGGTGCTACAGCAGCAGCTTACTACTATGGGGGCAGCAGAAATGGCAGCTCCGGCCATGGCGTTAGGGTTAGCCCGGT
GATCAACGTGCCATCCATTGGCACCAGCATGGTGAACATGCTGAGCTACTTGCTCTGCGACTGTGGCAACAAGACCACCA
AGAACAGGGGTTTCGGACTTAATTGCTAGCTTAGGTGGTAGTAGCTTAGATAGAAGTAATTAAACGATTAAGCAAATGTA
CTCATCATGCTTGCTAAGGTTCTAAATTCACTACTACTAGTCAATTGGGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis