Browse Element(s) Details


OsAffx.22797.1.S1_at

Description gb:NM_184251.1
DB_XREF= gi:34895583
TID=OsAffx.22797.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0407011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04020Os.4663.1.S1_at11/111+1743218..1745346AP2 domain containing protein, expressed
LOC_Os01g04020Os.4663.1.S2_at11/111+1743218..1745346AP2 domain containing protein, expressed
LOC_Os01g04030Os.16822.1.S1_at10/111+1751134..1754530Signal peptidase subunit family protein, expressed
LOC_Os01g04040NANA1+1754614..1755532Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor, putative
LOC_Os01g04050Os.3729.1.S1_at11/111+1756956..1757937Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor, putative, expressed
LOC_Os01g04070OsAffx.22797.1.S1_at11/111+1761836..1765746Leucine Rich Repeat family protein, expressed
LOC_Os01g04080Os.30899.1.S1_at10/111+1768299..1769212expressed protein
LOC_Os01g04090Os.31762.2.S1_x_at11/111+1772846..1774907expressed protein
LOC_Os01g04090Os.31762.1.S1_at11/111+1772846..1774907expressed protein
LOC_Os01g04100Os.27368.1.A1_at11/111+1777892..1779183expressed protein
LOC_Os01g04100Os.45428.1.S1_at1/111+1777892..1779183expressed protein
LOC_Os01g04110Os.10066.2.S1_at5/111+1786432..1788237expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22797.1.S1_at--255--7951Chr01:1764933..1764957 (25 bp)
GGATCTTAACTACCTTGACAGCAAT
LOC_Os01g04070
OsAffx.22797.1.S1_at--1130--931Chr01:1764982..1765006 (25 bp)
AGGAAGCATTCCTGAGTCGGTCGGA
LOC_Os01g04070
OsAffx.22797.1.S1_at--15--8491Chr01:1765054..1765078 (25 bp)
TGGAAGAATTCCACCCCAGATTGGC
LOC_Os01g04070
OsAffx.22797.1.S1_at--1094--1231Chr01:1765071..1765095 (25 bp)
AGATTGGCGGCATAACTGCTCTGGA
LOC_Os01g04070
OsAffx.22797.1.S1_at--730--1951Chr01:1765099..1765123 (25 bp)
ACTGGACCTGTCTTCGAATTGGATT
LOC_Os01g04070
OsAffx.22797.1.S1_at--1111--10291Chr01:1765160..1765184 (25 bp)
TTTCTAACCGTCTTGAACCTGAGCA
LOC_Os01g04070
OsAffx.22797.1.S1_at--549--1711Chr01:1765207..1765231 (25 bp)
ACCAGAGTCACGTCAATTTGCAACA
LOC_Os01g04070
OsAffx.22797.1.S1_at--937--1831Chr01:1765257..1765281 (25 bp)
ACGCAGGACTTTGTGGAGACCCATT
LOC_Os01g04070
OsAffx.22797.1.S1_at--612--2291Chr01:1765286..1765310 (25 bp)
AAATGTGCCAGTTGGAGTCCTCCAA
LOC_Os01g04070
OsAffx.22797.1.S1_at--715--4791Chr01:1765332..1765356 (25 bp)
GCTCCTCTGAGCATGTCGATATTGT
LOC_Os01g04070
OsAffx.22797.1.S1_at--694--6271Chr01:1765357..1765381 (25 bp)
GATGTTTCTCTTTGTTGGCGTGGGC
LOC_Os01g04070
Target Sequence 
GGATCTTAACTACCTTGACAGCAATCGACTTATCTGATAATGCATTGGAAGGAAGCATTCCTGAGTCGGTCGGAAAACTT
GTTTCACTACATGTGCTAAACCTGTCACATAATGCCTTCAGTGGAAGAATTCCACCCCAGATTGGCGGCATAACTGCTCT
GGAGTCACTGGACCTGTCTTCGAATTGGATTTCAGGGGAGATTCCTCAAGAGCTTACTAACCTGACATTTCTAACCGTCT
TGAACCTGAGCAATAACCAATTGGAGGGAAAGATACCAGAGTCACGTCAATTTGCAACATTTGAAAACAGTTCATATGAA
GGCAACGCAGGACTTTGTGGAGACCCATTGCCTAAATGTGCCAGTTGGAGTCCTCCAAGTGCTGAACCACATGTAGAGAG
CTCCTCTGAGCATGTCGATATTGTGATGTTTCTCTTTGTTGGCGTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis