Browse Element(s) Details


Os.27368.1.A1_at

Description gb:CB667262
DB_XREF= gi:29670987
DB_XREF=OSJNEd14I07.r
CLONE=OSJNEd14I07
TID=Os.27368.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27368 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_188458.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0410011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04030Os.16822.1.S1_at10/111+1751134..1754530Signal peptidase subunit family protein, expressed
LOC_Os01g04040NANA1+1754614..1755532Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor, putative
LOC_Os01g04050Os.3729.1.S1_at11/111+1756956..1757937Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor, putative, expressed
LOC_Os01g04070OsAffx.22797.1.S1_at11/111+1761836..1765746Leucine Rich Repeat family protein, expressed
LOC_Os01g04080Os.30899.1.S1_at10/111+1768299..1769212expressed protein
LOC_Os01g04090Os.31762.2.S1_x_at11/111+1772846..1774907expressed protein
LOC_Os01g04090Os.31762.1.S1_at11/111+1772846..1774907expressed protein
LOC_Os01g04100Os.27368.1.A1_at11/111+1777892..1779183expressed protein
LOC_Os01g04100Os.45428.1.S1_at1/111+1777892..1779183expressed protein
LOC_Os01g04110Os.10066.2.S1_at5/111+1786432..1788237expressed protein
LOC_Os01g04120Os.45427.1.A1_at11/111+1798832..1803069expressed protein
LOC_Os01g04120Os.23841.1.A1_at11/111+1798832..1803069expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27368.1.A1_at--538--2731Chr01:1778635..1778763 (25 bp)
AAGCAACTCGATCTGCTATTTCCCG
LOC_Os01g04100
Os.27368.1.A1_at--32--5111Chr01:1778840..1778864 (25 bp)
GCACTGTGACATCTACTATCAGGCA
LOC_Os01g04100
Os.27368.1.A1_at--158--4871Chr01:1778878..1778902 (25 bp)
GCTAGTAATTCATCGATCATCACAA
LOC_Os01g04100
Os.27368.1.A1_at--1034--3051Chr01:1778910..1778934 (25 bp)
AATCTCCTGTTATTAATCGATCCTT
LOC_Os01g04100
Os.27368.1.A1_at--890--491Chr01:1778925..1778949 (25 bp)
ATCGATCCTTATTAACCCCATGTTA
LOC_Os01g04100
Os.27368.1.A1_at--1020--4311Chr01:1778942..1778966 (25 bp)
CCATGTTAAATTCCTCCCTTGTTAT
LOC_Os01g04100
Os.27368.1.A1_at--651--91Chr01:1778951..1778975 (25 bp)
ATTCCTCCCTTGTTATGGTGTTGTT
LOC_Os01g04100
Os.27368.1.A1_at--656--6711Chr01:1779067..1779091 (25 bp)
GTTCTTGTTAGCAGAAGGACCTCCT
LOC_Os01g04100
Os.27368.1.A1_at--14--5311Chr01:1779080..1779104 (25 bp)
GAAGGACCTCCTAATTATGAAGTGG
LOC_Os01g04100
Os.27368.1.A1_at--1058--1511Chr01:1779106..1779130 (25 bp)
AGCAGTAGTGGTATTGTCCTCCTTG
LOC_Os01g04100
Os.27368.1.A1_at--1109--7251Chr01:1779121..1779145 (25 bp)
GTCCTCCTTGATGGTACATTTGTTA
LOC_Os01g04100
Target Sequence 
AAGCAACTCGATCTGCTATTTCCCGGTGCATGGCTGTCCGAGATCACCGTCGAGTCCTACCGGGTGCCCGACGATCGGTG
AGCTGAGCAGAGCAGATCAGAGCACTGTGACATCTACTATCAGGCAAGAAATCCCAGAAGCTAGTAATTCATCGATCATC
ACAATCACAACAATCTCCTGTTATTAATCGATCCTTATTAACCCCATGTTAAATTCCTCCCTTGTTATGGTGTTGTTGTT
ACGAGCTAGTAGTAGTAAATCGATTGGTTGATTGAACAGAGTGGGAGTAGCGGCANTATTAGCAGTGGTAATTAATTAAG
GAGTAGCTGTTCTTGTTAGCAGAAGGACCTCCTAATTATGAAGTGGTAGCAGTAGTGGTATTGTCCTCCTTGATGGTACA
TTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27368.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis