Browse Element(s) Details


Os.45427.1.A1_at

Description gb:NM_184257.1
DB_XREF= gi:34895595
GEN=OSJNBa0083M16.8
TID=Os.45427.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0083M16.8 (OSJNBa0083M16.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0083M16.8 (OSJNBa0083M16.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0412011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04090Os.31762.2.S1_x_at11/111+1772846..1774907expressed protein
LOC_Os01g04090Os.31762.1.S1_at11/111+1772846..1774907expressed protein
LOC_Os01g04100Os.27368.1.A1_at11/111+1777892..1779183expressed protein
LOC_Os01g04100Os.45428.1.S1_at1/111+1777892..1779183expressed protein
LOC_Os01g04110Os.10066.2.S1_at5/111+1786432..1788237expressed protein
LOC_Os01g04120Os.45427.1.A1_at11/111+1798832..1803069expressed protein
LOC_Os01g04120Os.23841.1.A1_at11/111+1798832..1803069expressed protein
LOC_Os01g04130Os.35230.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04130OsAffx.1926.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04140Os.45976.1.S1_x_at4/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04140Os.45976.1.S1_at2/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04150Os.46306.1.S1_x_at6/111+1822238..1826175transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45427.1.A1_at--719--8671Chr01:1799341..1799365 (25 bp)
TGTGTTCTCGTACACTCCGGCGACG
LOC_Os01g04120
Os.45427.1.A1_at--741--9451Chr01:1799238..1799262 (25 bp)
TCGGCGGCCAGCCTTGCGAGATATC
LOC_Os01g04120
Os.45427.1.A1_at--8--3611Chr01:1799226..1799250 (25 bp)
CTTGCGAGATATCCCGGTCCGGCGA
LOC_Os01g04120
Os.45427.1.A1_at--541--8451Chr01:1799054..1799078 (25 bp)
GGCCACACTACTGCGCGAGAGCGAG
LOC_Os01g04120
Os.45427.1.A1_at--766--5871Chr01:1799036..1799060 (25 bp)
GAGCGAGCTAGCTACTGTTTACTAT
LOC_Os01g04120
Os.45427.1.A1_at--907--10491Chr01:1798999..1799023 (25 bp)
TTAATTACCTACTAGCTGCCTACGT
LOC_Os01g04120
Os.45427.1.A1_at--746--4451Chr01:1798983..1799006 (24 bp)
GCCTACGTCCGTAGTTGATCCGTAA
LOC_Os01g04120
Os.45427.1.A1_at--359--551Chr01:1798953..1798977 (25 bp)
ATCCCTCTCCCTGGCTAGGTAATTA
LOC_Os01g04120
Os.45427.1.A1_at--1100--6851Chr01:1798902..1798926 (25 bp)
GTATTTTTAGCTTCTGGGACTTGGA
LOC_Os01g04120
Os.45427.1.A1_at--891--3891Chr01:1798889..1798913 (25 bp)
CTGGGACTTGGAGAGCTGCATGTAA
LOC_Os01g04120
Os.45427.1.A1_at--865--751Chr01:1798870..1798894 (25 bp)
ATGTAAGCTGCCTGTAACTCCTGTT
LOC_Os01g04120
Target Sequence 
TGTGTTCTCGTACACTCCGGCGACGTCTGCCGCCGCCGTCGCCGCGGCCTCGGCACCCTACGTGACGACGGACGAGCACC
ACGGGCGGAGGATCCACGCGAGCTCGGCGGCCAGCCTTGCGAGATATCCCGGTCCGGCGATGGTGGTGGCGGAGCCGGTG
GCCACCGTGCCGGAGGACACCTGCCTGGGGCTTGACCTCCAGCTCAGCCTTGCGCCCGCCGGCTTGTGACTTCACCGCCG
CGCTTGCATGAGTTCGCGCGCGTGGTCGACGACGACGACGACGATCCGGCCACACTACTGCGCGAGAGCGAGCTAGCTAC
TGTTTACTATGGTAAAAAAGAATTAATTACCTACTAGCTGCCTACGTCCGTAGTTGATCCGTAATAAGATCCCTCTCCCT
GGCTAGGTAATTAGCACTAGTAGTACTTAAGTAAATTAAGTATTTTTAGCTTCTGGGACTTGGAGAGCTGCATGTAAGCT
GCCTGTAACTCCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45427.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis