Browse Element(s) Details


Os.3729.1.S1_at

Description gb:AB059238.1
DB_XREF= gi:15887005
GEN=IAI2
TID=Os.3729.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.3729 (NCBI UniGene Cluster)
DEF=Oryza sativa IAI2 mRNA for wound induced protein homolog, complete cds.
PROD=wound induced protein homolog
FL= gb:AK059239.1 gb:AB059238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0405011/11Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04010Os.9023.1.S1_x_at11/111+1735670..1736622expressed protein
LOC_Os01g04010Os.9023.1.S1_at11/111+1735670..1736622expressed protein
LOC_Os01g04020Os.4663.1.S1_at11/111+1743218..1745346AP2 domain containing protein, expressed
LOC_Os01g04020Os.4663.1.S2_at11/111+1743218..1745346AP2 domain containing protein, expressed
LOC_Os01g04030Os.16822.1.S1_at10/111+1751134..1754530Signal peptidase subunit family protein, expressed
LOC_Os01g04040NANA1+1754614..1755532Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor, putative
LOC_Os01g04050Os.3729.1.S1_at11/111+1756956..1757937Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor, putative, expressed
LOC_Os01g04070OsAffx.22797.1.S1_at11/111+1761836..1765746Leucine Rich Repeat family protein, expressed
LOC_Os01g04080Os.30899.1.S1_at10/111+1768299..1769212expressed protein
LOC_Os01g04090Os.31762.2.S1_x_at11/111+1772846..1774907expressed protein
LOC_Os01g04090Os.31762.1.S1_at11/111+1772846..1774907expressed protein
LOC_Os01g04100Os.27368.1.A1_at11/111+1777892..1779183expressed protein
LOC_Os01g04100Os.45428.1.S1_at1/111+1777892..1779183expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3729.1.S1_at--218--1371Chr01:1757756..1757780 (25 bp)
AGAGCAGCACTCTCTTGGTGATCCT
LOC_Os01g04050
Os.3729.1.S1_at--585--891Chr01:1757723..1757747 (25 bp)
AGGCCGCTCTTATCATGGGAATCTT
LOC_Os01g04050
Os.3729.1.S1_at--584--411Chr01:1757712..1757736 (25 bp)
ATCATGGGAATCTTTGCTGCTGTTG
LOC_Os01g04050
Os.3729.1.S1_at--1155--5571Chr01:1757377..1757401 (25 bp)
GAAATGCGACCCTGTCTGCAAGAAA
LOC_Os01g04050
Os.3729.1.S1_at--1015--1411Chr01:1757357..1757381 (25 bp)
AGAAATGCGCCGTCGTCAAGACCTA
LOC_Os01g04050
Os.3729.1.S1_at--515--2751Chr01:1757340..1757364 (25 bp)
AAGACCTACCCTGTGAAGATGTTCA
LOC_Os01g04050
Os.3729.1.S1_at--155--1311Chr01:1757324..1757348 (25 bp)
AGATGTTCAAGTGCACCGACACCTT
LOC_Os01g04050
Os.3729.1.S1_at--114--651Chr01:1757235..1757259 (25 bp)
ATGCATGAACGCGAGCCATTGCTGT
LOC_Os01g04050
Os.3729.1.S1_at--106--5871Chr01:1757223..1757247 (25 bp)
GAGCCATTGCTGTCATATATCTGTG
LOC_Os01g04050
Os.3729.1.S1_at--1088--9591Chr01:1757168..1757192 (25 bp)
TCATATCTCGATGCTAGTATACTGT
LOC_Os01g04050
Os.3729.1.S1_at--149--1411Chr01:1757062..1757086 (25 bp)
AGACTTGTGTTTCCCCTGGACTTGA
LOC_Os01g04050
Target Sequence 
AGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAAT
GCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGG
GCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGA
AGATGTTCAAGTGCACCGACACCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGATG
ACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCAT
ATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGCTAGA
AGGTGTNTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis