Browse Element(s) Details


Os.9025.3.S1_at

Description gb:AK072072.1
DB_XREF= gi:32982095
TID=Os.9025.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9025 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111N21, full insert sequence.
FL= gb:AK072072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6815010/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68120Os.49417.1.S1_at11/111+39919469..39932566RNase3 domain containing protein, expressed
LOC_Os01g68130OsAffx.2433.1.S1_at9/111+39935234..39938852hypothetical protein
LOC_Os01g68140Os.10675.1.A1_at11/111+39939872..39941187expressed protein
LOC_Os01g68160Os.9025.2.S1_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160Os.9025.1.A1_s_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160OsAffx.21304.1.S1_at2/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68150Os.9025.3.S1_at10/111+39943995..39947432retrotransposon protein, putative, unclassified, expressed
LOC_Os01g68179NANA1+39961528..39962031hypothetical protein
LOC_Os01g68200OsAffx.23969.1.S1_at11/111+39965630..39968123expressed protein
LOC_Os01g68210OsAffx.11786.1.S1_at11/111+39970541..39971692hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9025.3.S1_at--1061--7991Chr01:39946839..39946863 (25 bp)
GGATGTCGTTCAAGTGCTACACCAA
LOC_Os01g68150
Os.9025.3.S1_at--862--771Chr01:39946883..39946907 (25 bp)
ATGTGCTCAGACAGGTGATCCAGTT
LOC_Os01g68150
Os.9025.3.S1_at--1084--951Chr01:39946923..39946947 (25 bp)
AGGACGCTTGATATATCTGTGCCAT
LOC_Os01g68150
Os.9025.3.S1_at--284--1391Chr01:39946951..39946975 (25 bp)
AGACCTGATATCTCTTATGTAGTGA
LOC_Os01g68150
Os.9025.3.S1_at--388--651Chr01:39946993..39947017 (25 bp)
ATGCATGATCCTAGGTCTGGTCTTT
LOC_Os01g68150
Os.9025.3.S1_at--331--9471Chr01:39947008..39947032 (25 bp)
TCTGGTCTTTTGGAGGCAGCTCATA
LOC_Os01g68150
Os.9025.3.S1_at--255--8251Chr01:39947057..39947081 (25 bp)
GGCACTATGGTGCTCCATTGTGATA
LOC_Os01g68150
Os.9025.3.S1_at--638--2451Chr01:39947105..39947129 (25 bp)
AACAATCCGGTTCAGCATGATCACA
LOC_Os01g68150
Os.9025.3.S1_at--624--8031NONE
GGAGTGCTTGGCCTAGAGTATACTA
NONE
Os.9025.3.S1_at--1035--1031Chr01:39947342..39947366 (25 bp)
AGGGACCTGCTTGTAATTCTGTTAA
LOC_Os01g68150
Os.9025.3.S1_at--206--1111Chr01:39947398..39947422 (25 bp)
AGTGGTGAGGCCAATCATTCCCCAA
LOC_Os01g68150
Target Sequence 
GGATGTCGTTCAAGTGCTACACCAATTGATAAAAATCATCAACTATGTGCTCAGACAGGTGATCCAGTTGACAAGGAGGC
TTGTAGGACGCTTGATATATCTGTGCCATACAAGACCTGATATCTCTTATGTAGTGAGTGTGGTAAATAGATATATGCAT
GATCCTAGGTCTGGTCTTTTGGAGGCAGCTCATAGAATCCTAAGATACTTGAAGGGATGGCACTATGGTGCTCCATTGTG
ATAATAAATCAGTTATCAGCATTGCAAACAATCCGGTTCAGCATGATCACATAAAGCATATCGAAATTGATAGGTTGTTC
ATCAAAGAGAAAATTGATAGTGGAGTGCTTGGCCTAGAGTATACTAAATCTTGTGAACAACTAGCTGATTGTCTAACAAA
GGGATTAGGCCCAAGTGAATGAGTTATTTTGTAACAAGATGGGCATGATCGATATCTTTTGCCCATCTTGAGGGGGAGTG
TTGGTGTAATATGCAACTTTATCAGGGACCTGCTTGTAATTCTGTTAAATAAATATATGCATGTGTGGGGGTACTGGTCA
GTGGTGAGGCCAATCATTCCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9025.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis