Browse Element(s) Details


Os.9083.1.S1_at

Description gb:AK058925.1
DB_XREF= gi:32968943
TID=Os.9083.1
CNT=58
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9083 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-016-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-C02, full insert sequence.
FL= gb:AK058925.1 gb:AK121724.1 gb:AK103967.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3530010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35260OsAffx.14148.2.S1_s_at11/114+21241121..21258041helicase domain-containing protein, putative, expressed
LOC_Os04g35260OsAffx.14148.1.S1_at11/114+21241121..21258041helicase domain-containing protein, putative, expressed
LOC_Os04g35270OsAffx.14149.1.S1_at11/114+21260515..21262074Alpha4-fucosyltransferase, putative, expressed
LOC_Os04g35280Os.17484.1.S1_at11/114+21264182..21268657Neutral/alkaline invertase, putative, expressed
LOC_Os04g35290Os.9630.1.S1_at11/114+21274652..21277659Thioredoxin family protein, expressed
LOC_Os04g35300Os.9083.1.S1_at10/114+21279120..21281231expressed protein
LOC_Os04g35310OsAffx.14150.1.S1_at11/114+21285733..21287045BTB/POZ domain containing protein
LOC_Os04g35320NANA4+21292781..21295790retrotransposon protein, putative, unclassified
LOC_Os04g35330NANA4+21296417..21302573retrotransposon protein, putative, unclassified
LOC_Os04g35340OsAffx.14151.2.S1_s_at11/114+21304417..21305446BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9083.1.S1_at--778--8391Chr04:21281047..21281068 (22 bp)
GGCGCTGAGGCCTCCAAGACAGATT
LOC_Os04g35300
Os.9083.1.S1_at--513--891NONE
AGGCCTCCAAGACAGATTCTCGTGG
NONE
Os.9083.1.S1_at--778--5471Chr04:21279375..21279399 (25 bp)
GAACTTACTTTCTATAGCACTCCGC
LOC_Os04g35300
Os.9083.1.S1_at--470--3171Chr04:21279324..21279348 (25 bp)
AATTGGTTATTGCTTGTTACTCCAT
LOC_Os04g35300
Os.9083.1.S1_at--1106--7051Chr04:21279280..21279304 (25 bp)
GTAAGCTCCTTTTCATGGCGTTTGA
LOC_Os04g35300
Os.9083.1.S1_at--553--8371Chr04:21279264..21279288 (25 bp)
GGCGTTTGATGTAGGAATACTGCTA
LOC_Os04g35300
Os.9083.1.S1_at--587--411Chr04:21279224..21279248 (25 bp)
ATCATGGCATGAACTTTCCTGGCTG
LOC_Os04g35300
Os.9083.1.S1_at--382--2511Chr04:21279213..21279237 (25 bp)
AACTTTCCTGGCTGTGGAGAAACCA
LOC_Os04g35300
Os.9083.1.S1_at--146--8071Chr04:21279198..21279222 (25 bp)
GGAGAAACCAGGCAGCGTGATCACA
LOC_Os04g35300
Os.9083.1.S1_at--13--4671Chr04:21279184..21279208 (25 bp)
GCGTGATCACAGTTGTTTTAACTCA
LOC_Os04g35300
Os.9083.1.S1_at--315--1251Chr04:21279123..21279147 (25 bp)
AGTTGGAATTCATGTTTACTACTTG
LOC_Os04g35300
Target Sequence 
GGCGCTGAGGCCTCCAAGACAGATTCTCGTGGATTCCATGCCACTGGTGTGAAGAGGATGGGAGGGCATGGCCATGATGA
GCCCTACTACCTCCATGCCAAGCACATGTACAACTTGCACAGGATGAAGCACCAGAAGCCGAAGGTGTATCTTTCCGTGC
TGGGAGCAGTTGGCATTGGCATCGCAGTCCCAGTTTATGCGGTTGTTTTCCAGCAGAAGAAGACCGCCTCCGGATAAGCT
CTCTAAGTGCTACATAATGAACTTACTTTCTATAGCACTCCGCGAAGTTAAAATTGGGACTTCACTTTAAATTGGTTATT
GCTTGTTACTCCATTTTGCACTTGCCTGAAGTTGTAAGCTCCTTTTCATGGCGTTTGATGTAGGAATACTGCTATTTTCT
GTTAATAATATCATGGCATGAACTTTCCTGGCTGTGGAGAAACCAGGCAGCGTGATCACAGTTGTTTTAACTCATATTTT
TTTTTATTTCTTATTGTGATTGAAATTGATAGTTGGAATTCATGTTTACTACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis